Click here to switch to the map view.

The map label for this gene is yncD [C]

Identifier: 126453144

GI number: 126453144

Start: 2938937

End: 2941273

Strand: Reverse

Name: yncD [C]

Synonym: BURPS1106A_2999

Alternate gene names: 126453144

Gene position: 2941273-2938937 (Counterclockwise)

Preceding gene: 126455411

Following gene: 126454879

Centisome position: 73.74

GC content: 68.64

Gene sequence:

>2337_bases
ATGTTCCATCAACTTGCCGCGCCCGGCGCGCGCAGGCGGCTCGCGGCCGCCTGCGCCGCGGCGCTCGCCTGGCCCGCCGC
CCACGCGGCTTCGACGGCCGCCGCCGTGCCTGCCGATTCAACGCCGGCCGCCGCCGCGGAGATGACCGCATCCGGGAAAA
CCTTGGATACCGTCAAGGTCACCGCGCAGCGCGCCGCGTTCGCGCCCGACACGCCCGGCGTCGTCGAGGCGCTCACGCGC
GAGCAGATCGATTCGCACGTCAACGTGACGACCGAAGACGCGCTCAAGTACGCGCCGAACCTGATGGTGCGCCGGCGCTA
CATCGGCGACCGCAATTCAGTGTTCGCCGGCCGAGACTTCAATGAGCTGCAGAGCGCGCGCGGACTCGTCTATGCGGACG
GCATCCTGCTGTCCAATCTGCTCGGTTCCAGCTATTCGTATCCGCCGCGCTGGTCGCTGATCCAGCCCGACGACATCGCA
CGCGTGGACGTGCTGTATGGCCCGTTTTCCGCGCTCTACCCGGGCAACGCGATCGGCTCGACCGTGCAGATCACCACGCA
CAAGCCGCAGCGGCTCGAGGCGTCGGTGTCGACGCAGTTCTTCACGCAGCGCTATCGCGACGGCTACGGCTTCGCCGACA
GCTTCGGCGGCAATCACCAGAGCGCGCGCATCGCCGATCGCGTCGGACGTTTCTGGTATGCGCTGTCGCTCGACCGGCTC
GAGAACGACAGCCAGCCGATGCAATACGCGAGCCCGAACGGCGCGTTCGATCCGAGGCTCGGCGCACCCGTGCCGGTGAC
GGGGGCCGTCTCCGACATCGGGCCGAACGGCCGGCCGCGGACGATCGTCGGCGCGCAGACGATCGAGCGCACCGAGCAGC
TCAACGAGACGTTGCGCTTCGGCTACGCGTTCACCGATCACGTCGACGCGACGGTCACGCTCGGCCACTGGGAGAATCAC
TACCGGCAGCACGGCGACACTTTCCTGCGCGACGCGGCGGGCAACCCGGTGTACGGCGGCAACGTGTCGTTCGGCGGGCG
CAACTACACGGTGTCGCCGGGCGCGTTCGCGCCGCAGACGGGCGACCAGGAGAACTGGCTGTACGGGCTCGGGCTCGACG
CGCGGCTCGCGTCCGGCTGGAAGCTGTCGGCCACCGCGTCCGCCTACGAGGTGTCGCGCGACGTGCTGCGCAGCGCGTCC
GGCGCGCCGCCCGGCGCCTGGGACGGCGGGCCGGGCACGGTGTCCCATGGCGACGGCACCGGCTGGCGCACCGTCGACTT
GCGCGCGGAGTCGCCCGACGTGCGCGGGCACCGTTTTTCGTTCGGCTACCACTTCGATACGTATTTCCTGCGCAACGCGA
CCTACAACACGGCCGACTGGCAAAACGCGGTGCCGACGACGCTCGTGAACCGCTATCGCGGCAACACGCGCACGCAGGCG
CTGTATGCACAGGACGCGTGGCGCGTCGCGCCCGGCTGGCTCGCGACGCTCGGCCTGCGCTACGAGCGCTGGGATGCATA
CGGCGGCGAGCTCGGCGGCGCGACCGCGACGCTCGGCTACGCGGAGCGCGGCGCGACCGCGTTCTCGCCGAAGCTCTCGC
TCGAATGGCAGCCGGCCAGCGCGTGGCGCCTGCGGTTGTCGTTCGCGACGGGCACGCGCTTTCCGACGGTCGCCGAGCTG
TTCCAGGGCACGATCTCGAACAACGCGATCGTCAACAACAACCCGAATCTGCAGCCGGAAAAGGCGATCGACTGGGATTT
CACCGCCGAGCGCGACGTCGGCTTCGGCGTCGTGCGCGCGAGCGTGTTCCAGAGCGATCTGCGCAATTCGATCTACAGCC
AGACCACGCTTGCCGGCGCGTCGACGTACACGAACGTCTCGAACGTCGACCGCGTGCGGGTGCGCGGCGTCGAGCTCGCG
TTCTCGGGGCAGGACGTCGCGCTCAAGGGGCTCGACGTCGACGCGAACGTGTCCGCGACGAATGCGCAGACGCTTGCCGA
TGCGGCCAATCCGAACTACGTCGGCGCGCGCTGGCCGCGGATTCCGCGGATGCGCGCGAACCTGCTCGCGTCGTACCGCT
TCGACGAGCATTGGATGACGAGCGTCGGCGTTCGCTATTCGGGGCGGCAGTACAACGCGCTCGACAACAGCGACGTGAAT
CCGGGCGTATACGGCGGCACCAGCTCGTTCATGGTCGTCGACCTGAAGGCGCGCTATCGGTTCGATCGGCACTGGCTCGC
GTCGTTCGGCATCGACAACGTGACCGATCGCCGCTACTACGTGTTCCATCCTTATCCGGGCCGCACTTTTTATGGAGAGT
TGAAATGGTCGCTGTGA

Upstream 100 bases:

>100_bases
CGCGACGTCCGGCGTCGTGCCCGCGCGTCCTCGATGAGGGCGCGGCGCACGCTCGCGTGCGCGGCGATTCGCCGACCTCG
TTTTCAGGATTCGCTTTTCC

Downstream 100 bases:

>100_bases
GGCATCGATTGGCGGGCGTCGCGCTTGCCGCGTTCGCGTGCGGTGCGCTCGCGCACGACGCGCAGCCGGCCGCGGGCGCA
TCGTCCGCGCACGCGGCGCA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Protein; NB-Dependent Siderophore Receptor; Nb-Dependent Receptor; NB Dependent Receptor; Hydroxamate-Type Ferrisiderophore Receptor; NB-Dependent Receptor Plug; Outer Membrane Receptor Protein; Vitamin; Outer Membrane Receptor; Ferrisiderophore Receptor Protein; NB-Dependent Receptor Domain Protein; Fe Transport Outer Membrane Receptor Protein

Number of amino acids: Translated: 778; Mature: 778

Protein sequence:

>778_residues
MFHQLAAPGARRRLAAACAAALAWPAAHAASTAAAVPADSTPAAAAEMTASGKTLDTVKVTAQRAAFAPDTPGVVEALTR
EQIDSHVNVTTEDALKYAPNLMVRRRYIGDRNSVFAGRDFNELQSARGLVYADGILLSNLLGSSYSYPPRWSLIQPDDIA
RVDVLYGPFSALYPGNAIGSTVQITTHKPQRLEASVSTQFFTQRYRDGYGFADSFGGNHQSARIADRVGRFWYALSLDRL
ENDSQPMQYASPNGAFDPRLGAPVPVTGAVSDIGPNGRPRTIVGAQTIERTEQLNETLRFGYAFTDHVDATVTLGHWENH
YRQHGDTFLRDAAGNPVYGGNVSFGGRNYTVSPGAFAPQTGDQENWLYGLGLDARLASGWKLSATASAYEVSRDVLRSAS
GAPPGAWDGGPGTVSHGDGTGWRTVDLRAESPDVRGHRFSFGYHFDTYFLRNATYNTADWQNAVPTTLVNRYRGNTRTQA
LYAQDAWRVAPGWLATLGLRYERWDAYGGELGGATATLGYAERGATAFSPKLSLEWQPASAWRLRLSFATGTRFPTVAEL
FQGTISNNAIVNNNPNLQPEKAIDWDFTAERDVGFGVVRASVFQSDLRNSIYSQTTLAGASTYTNVSNVDRVRVRGVELA
FSGQDVALKGLDVDANVSATNAQTLADAANPNYVGARWPRIPRMRANLLASYRFDEHWMTSVGVRYSGRQYNALDNSDVN
PGVYGGTSSFMVVDLKARYRFDRHWLASFGIDNVTDRRYYVFHPYPGRTFYGELKWSL

Sequences:

>Translated_778_residues
MFHQLAAPGARRRLAAACAAALAWPAAHAASTAAAVPADSTPAAAAEMTASGKTLDTVKVTAQRAAFAPDTPGVVEALTR
EQIDSHVNVTTEDALKYAPNLMVRRRYIGDRNSVFAGRDFNELQSARGLVYADGILLSNLLGSSYSYPPRWSLIQPDDIA
RVDVLYGPFSALYPGNAIGSTVQITTHKPQRLEASVSTQFFTQRYRDGYGFADSFGGNHQSARIADRVGRFWYALSLDRL
ENDSQPMQYASPNGAFDPRLGAPVPVTGAVSDIGPNGRPRTIVGAQTIERTEQLNETLRFGYAFTDHVDATVTLGHWENH
YRQHGDTFLRDAAGNPVYGGNVSFGGRNYTVSPGAFAPQTGDQENWLYGLGLDARLASGWKLSATASAYEVSRDVLRSAS
GAPPGAWDGGPGTVSHGDGTGWRTVDLRAESPDVRGHRFSFGYHFDTYFLRNATYNTADWQNAVPTTLVNRYRGNTRTQA
LYAQDAWRVAPGWLATLGLRYERWDAYGGELGGATATLGYAERGATAFSPKLSLEWQPASAWRLRLSFATGTRFPTVAEL
FQGTISNNAIVNNNPNLQPEKAIDWDFTAERDVGFGVVRASVFQSDLRNSIYSQTTLAGASTYTNVSNVDRVRVRGVELA
FSGQDVALKGLDVDANVSATNAQTLADAANPNYVGARWPRIPRMRANLLASYRFDEHWMTSVGVRYSGRQYNALDNSDVN
PGVYGGTSSFMVVDLKARYRFDRHWLASFGIDNVTDRRYYVFHPYPGRTFYGELKWSL
>Mature_778_residues
MFHQLAAPGARRRLAAACAAALAWPAAHAASTAAAVPADSTPAAAAEMTASGKTLDTVKVTAQRAAFAPDTPGVVEALTR
EQIDSHVNVTTEDALKYAPNLMVRRRYIGDRNSVFAGRDFNELQSARGLVYADGILLSNLLGSSYSYPPRWSLIQPDDIA
RVDVLYGPFSALYPGNAIGSTVQITTHKPQRLEASVSTQFFTQRYRDGYGFADSFGGNHQSARIADRVGRFWYALSLDRL
ENDSQPMQYASPNGAFDPRLGAPVPVTGAVSDIGPNGRPRTIVGAQTIERTEQLNETLRFGYAFTDHVDATVTLGHWENH
YRQHGDTFLRDAAGNPVYGGNVSFGGRNYTVSPGAFAPQTGDQENWLYGLGLDARLASGWKLSATASAYEVSRDVLRSAS
GAPPGAWDGGPGTVSHGDGTGWRTVDLRAESPDVRGHRFSFGYHFDTYFLRNATYNTADWQNAVPTTLVNRYRGNTRTQA
LYAQDAWRVAPGWLATLGLRYERWDAYGGELGGATATLGYAERGATAFSPKLSLEWQPASAWRLRLSFATGTRFPTVAEL
FQGTISNNAIVNNNPNLQPEKAIDWDFTAERDVGFGVVRASVFQSDLRNSIYSQTTLAGASTYTNVSNVDRVRVRGVELA
FSGQDVALKGLDVDANVSATNAQTLADAANPNYVGARWPRIPRMRANLLASYRFDEHWMTSVGVRYSGRQYNALDNSDVN
PGVYGGTSSFMVVDLKARYRFDRHWLASFGIDNVTDRRYYVFHPYPGRTFYGELKWSL

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 85188; Mature: 85188

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHQLAAPGARRRLAAACAAALAWPAAHAASTAAAVPADSTPAAAAEMTASGKTLDTVKV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHCCCCCEEEEEEE
TAQRAAFAPDTPGVVEALTREQIDSHVNVTTEDALKYAPNLMVRRRYIGDRNSVFAGRDF
EHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHCCCCCCEECCCCH
NELQSARGLVYADGILLSNLLGSSYSYPPRWSLIQPDDIARVDVLYGPFSALYPGNAIGS
HHHHHHCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCCCC
TVQITTHKPQRLEASVSTQFFTQRYRDGYGFADSFGGNHQSARIADRVGRFWYALSLDRL
EEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEHHHH
ENDSQPMQYASPNGAFDPRLGAPVPVTGAVSDIGPNGRPRTIVGAQTIERTEQLNETLRF
CCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEECHHHHHHHHHHHHHHHH
GYAFTDHVDATVTLGHWENHYRQHGDTFLRDAAGNPVYGGNVSFGGRNYTVSPGAFAPQT
CEEEECCCCEEEEECCHHHHHHHHCCHHHHHCCCCCCCCCCEEECCCEEEECCCCCCCCC
GDQENWLYGLGLDARLASGWKLSATASAYEVSRDVLRSASGAPPGAWDGGPGTVSHGDGT
CCCCCEEEEECCCHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
GWRTVDLRAESPDVRGHRFSFGYHFDTYFLRNATYNTADWQNAVPTTLVNRYRGNTRTQA
CEEEEEEECCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHEE
LYAQDAWRVAPGWLATLGLRYERWDAYGGELGGATATLGYAERGATAFSPKLSLEWQPAS
EEECCCCEECCCHHHHHCCEEEHHCCCCCCCCCCEEEECHHHCCCCCCCCCEEEEECCCC
AWRLRLSFATGTRFPTVAELFQGTISNNAIVNNNPNLQPEKAIDWDFTAERDVGFGVVRA
EEEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHH
SVFQSDLRNSIYSQTTLAGASTYTNVSNVDRVRVRGVELAFSGQDVALKGLDVDANVSAT
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCC
NAQTLADAANPNYVGARWPRIPRMRANLLASYRFDEHWMTSVGVRYSGRQYNALDNSDVN
CHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCEEECCCEECCCCCCCCC
PGVYGGTSSFMVVDLKARYRFDRHWLASFGIDNVTDRRYYVFHPYPGRTFYGELKWSL
CCCCCCCCCEEEEEEHHHHCCCHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEEECC
>Mature Secondary Structure
MFHQLAAPGARRRLAAACAAALAWPAAHAASTAAAVPADSTPAAAAEMTASGKTLDTVKV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHCCCCCEEEEEEE
TAQRAAFAPDTPGVVEALTREQIDSHVNVTTEDALKYAPNLMVRRRYIGDRNSVFAGRDF
EHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHCCCCCCEECCCCH
NELQSARGLVYADGILLSNLLGSSYSYPPRWSLIQPDDIARVDVLYGPFSALYPGNAIGS
HHHHHHCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCCCC
TVQITTHKPQRLEASVSTQFFTQRYRDGYGFADSFGGNHQSARIADRVGRFWYALSLDRL
EEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEHHHH
ENDSQPMQYASPNGAFDPRLGAPVPVTGAVSDIGPNGRPRTIVGAQTIERTEQLNETLRF
CCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEECHHHHHHHHHHHHHHHH
GYAFTDHVDATVTLGHWENHYRQHGDTFLRDAAGNPVYGGNVSFGGRNYTVSPGAFAPQT
CEEEECCCCEEEEECCHHHHHHHHCCHHHHHCCCCCCCCCCEEECCCEEEECCCCCCCCC
GDQENWLYGLGLDARLASGWKLSATASAYEVSRDVLRSASGAPPGAWDGGPGTVSHGDGT
CCCCCEEEEECCCHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
GWRTVDLRAESPDVRGHRFSFGYHFDTYFLRNATYNTADWQNAVPTTLVNRYRGNTRTQA
CEEEEEEECCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHEE
LYAQDAWRVAPGWLATLGLRYERWDAYGGELGGATATLGYAERGATAFSPKLSLEWQPAS
EEECCCCEECCCHHHHHCCEEEHHCCCCCCCCCCEEEECHHHCCCCCCCCCEEEEECCCC
AWRLRLSFATGTRFPTVAELFQGTISNNAIVNNNPNLQPEKAIDWDFTAERDVGFGVVRA
EEEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHH
SVFQSDLRNSIYSQTTLAGASTYTNVSNVDRVRVRGVELAFSGQDVALKGLDVDANVSAT
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCC
NAQTLADAANPNYVGARWPRIPRMRANLLASYRFDEHWMTSVGVRYSGRQYNALDNSDVN
CHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCEEECCCEECCCCCCCCC
PGVYGGTSSFMVVDLKARYRFDRHWLASFGIDNVTDRRYYVFHPYPGRTFYGELKWSL
CCCCCCCCCEEEEEEHHHHCCCHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA