| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
Click here to switch to the map view.
The map label for this gene is 126454868
Identifier: 126454868
GI number: 126454868
Start: 2552199
End: 2554031
Strand: Reverse
Name: 126454868
Synonym: BURPS1106A_2586
Alternate gene names: NA
Gene position: 2554031-2552199 (Counterclockwise)
Preceding gene: 126451949
Following gene: 126451714
Centisome position: 64.04
GC content: 68.69
Gene sequence:
>1833_bases ATGACGATCGGTTCGAAGACGAAGCTTGCGCTCGGCATCGCGCTGGCGATGCCCGCCGCGGCCTGGGCGTACACGTTCTA TGCGCTCGGCGACAGCCTGACCGACAATGGCCGCGTCGTCAGGCTCACCGGCATCCTGCCGAACGCGACGTCGACGATCT TTCGCGGCGGCCGCTCGTCGAACGGCCCGGTCTGGGCCGAGTATCTGCCGGGCCTGATCGGCGCGCGATTCGCGCCCGAT GACGATTACGCGATCAACGGTGCGCTGAGCGGGCACGGCGGCTATCTCAACATCATTCCGACGCGCCCGACATGGCGCAC GCTGCCCGGGTTCGCCGATCAGGTCGAGCAGTTGATCGCCGCACATCCGCGCCTGCGGCGCGACGATCTGGTCGGCGTCT GGATCGGCACCAACGATCAGGACCTGACCAAGGCGAGCCTGAACGGCATCGAGCCGTTTCTCGGCGTGCCCCGGCCGGCC AATATCGCGGAAATGAGCGCGTATACGCTAACGAACCTCAATGCGCAGTTGCAGCGTTTGATCGGCGCCGGCGCGCGTCA GTTCGTGATCCTGAACCTGAACGACGCCGGCGGCACGCGGCCCGGATACGTCGACTACAACGGCAAGCTGCCCGAGGACC TCGCGCGGTTTTCGCGGCAGGGCGTGAACGTCCATCTGTTCGACGTGTCGGCGCTGCTGAACCAGATGCGCCGCAACCCG TCGGCCTACGGGCTGAACGACACGCCGGACGTGCAGTGCCGCTACGTTCCCTCCTGCAGCGGCGGCTCGGTCGAGCTGCA GAACACCTATCTCACGGCGGACGGCACGCACATGATGACGAGCGTGCACGAGTACATCGCACGCTACCTCGCGAATCAAC TGAATGCGCCGGCCGCGATTTCGACCGCGCCGGTGCTTGGGCTCGACGTGGCGCGGGCGGGCGCGCTGTCGGCGCTGAAC GCGGCCGACGGCGGGCCGCTCGGGCCAGCGCGCGTCGCGTGGTCGGACAGGCTGTCGCTTTTCGCGGACGTCGGCTACAC GCGCAACTTTCACGGCGCGGCGGGCGGCATGAACGCATTCGATAGCGACGTCGAGATGTTCTCGATCGGCGCCGACTACA AGCTATCCGAAGCATCGAGAGCCGGTGCGCTCTTGTCGAGCGGCAATGCGAACGGCTCGCTCGCCGGCGGGCAAGGGCGG ATCGGGCTGCATGCATACCGGCTCGGCGTCTATCACGCATTCGAGCGCGCGGGCCTGTTCGTGCGCGCGTATGCCGGCGC GGGCTGGAGCCGATATCGGCTCGATCGCGCCGCCGTGCTGCCGGGCGCCGTTCGCGCGAGCACCAGCGGCTTCGATTTCG GTGCGCTCGTCAAGGCCGGATATCTGTTCGCGCTCGGCGGCGTGCGGCTCGGCCCCGTCGCCGACGTCGGCTATACGCAG CTTGTCGCGCGCGGCTACACGGAAGACGGCGATCCGATTCTCGCGCAGAACGTCGGCGTGCAGCGGCTGAAGGGCGTGAG CGCGGGAGCGGGCGTGCGCTTTGCCGCGCCGCTCGCGGCGATCGGGCTGCGCGCCGGCGAGTTGTCCGCCGAGGCGCAAC TGCGGCACGACGCATTCGGCGACCGTACGCTCGTCACCGCCCAGCGTTATGCGCCCGGTCTGCCGATCGGCACGGCCGTC GACGGCGCGAGCGCAACCTATGAGCGGCTGTCGGTCGCGCTCACCGTGAATCCCGCGAAGCGGTGGCGGGGCAAGCTCGT CGTGCAGACGGACCTCGGTACCGCGCAGCGCCGTTCGTACACGCTGCTCGCCCTGCTGGGCGGCACGTTTTGA
Upstream 100 bases:
>100_bases GCCGCCGGCTTTCAACCGTGATTCCCGACCCGGAAAAAAGGCTCGCGCACGAGCCTCGGACGACATGCATGCCCACTATC GAGGGAAGGCGCTCCGTCGC
Downstream 100 bases:
>100_bases GGGCGCGGCGCTTCGCGCCCGCGGCTAGTCGTCCGCGGCTAGTCGTCCGCGGCCGCGAAGCGCCGCGCCGCGCCGTGTGC GCCGCCGCCGACGAAGCGGA
Product: GDSL-like lipase/acylhydrolase domain/outer membrane autotransporter barrel domain-containing protein
Products: NA
Alternate protein names: Esterase/Lipase/Outer Membrane Autotransporter; Outer Membrane Autotransporter Barrel; GDSL Family Lipase; Outer Membrane Autotransporter Barrel Domain Protein; G-D-S-L Family Lipolytic Protein; Lipolytic Protein G-D-S-L Family; EstA Protein; Exported Lipase
Number of amino acids: Translated: 610; Mature: 609
Protein sequence:
>610_residues MTIGSKTKLALGIALAMPAAAWAYTFYALGDSLTDNGRVVRLTGILPNATSTIFRGGRSSNGPVWAEYLPGLIGARFAPD DDYAINGALSGHGGYLNIIPTRPTWRTLPGFADQVEQLIAAHPRLRRDDLVGVWIGTNDQDLTKASLNGIEPFLGVPRPA NIAEMSAYTLTNLNAQLQRLIGAGARQFVILNLNDAGGTRPGYVDYNGKLPEDLARFSRQGVNVHLFDVSALLNQMRRNP SAYGLNDTPDVQCRYVPSCSGGSVELQNTYLTADGTHMMTSVHEYIARYLANQLNAPAAISTAPVLGLDVARAGALSALN AADGGPLGPARVAWSDRLSLFADVGYTRNFHGAAGGMNAFDSDVEMFSIGADYKLSEASRAGALLSSGNANGSLAGGQGR IGLHAYRLGVYHAFERAGLFVRAYAGAGWSRYRLDRAAVLPGAVRASTSGFDFGALVKAGYLFALGGVRLGPVADVGYTQ LVARGYTEDGDPILAQNVGVQRLKGVSAGAGVRFAAPLAAIGLRAGELSAEAQLRHDAFGDRTLVTAQRYAPGLPIGTAV DGASATYERLSVALTVNPAKRWRGKLVVQTDLGTAQRRSYTLLALLGGTF
Sequences:
>Translated_610_residues MTIGSKTKLALGIALAMPAAAWAYTFYALGDSLTDNGRVVRLTGILPNATSTIFRGGRSSNGPVWAEYLPGLIGARFAPD DDYAINGALSGHGGYLNIIPTRPTWRTLPGFADQVEQLIAAHPRLRRDDLVGVWIGTNDQDLTKASLNGIEPFLGVPRPA NIAEMSAYTLTNLNAQLQRLIGAGARQFVILNLNDAGGTRPGYVDYNGKLPEDLARFSRQGVNVHLFDVSALLNQMRRNP SAYGLNDTPDVQCRYVPSCSGGSVELQNTYLTADGTHMMTSVHEYIARYLANQLNAPAAISTAPVLGLDVARAGALSALN AADGGPLGPARVAWSDRLSLFADVGYTRNFHGAAGGMNAFDSDVEMFSIGADYKLSEASRAGALLSSGNANGSLAGGQGR IGLHAYRLGVYHAFERAGLFVRAYAGAGWSRYRLDRAAVLPGAVRASTSGFDFGALVKAGYLFALGGVRLGPVADVGYTQ LVARGYTEDGDPILAQNVGVQRLKGVSAGAGVRFAAPLAAIGLRAGELSAEAQLRHDAFGDRTLVTAQRYAPGLPIGTAV DGASATYERLSVALTVNPAKRWRGKLVVQTDLGTAQRRSYTLLALLGGTF >Mature_609_residues TIGSKTKLALGIALAMPAAAWAYTFYALGDSLTDNGRVVRLTGILPNATSTIFRGGRSSNGPVWAEYLPGLIGARFAPDD DYAINGALSGHGGYLNIIPTRPTWRTLPGFADQVEQLIAAHPRLRRDDLVGVWIGTNDQDLTKASLNGIEPFLGVPRPAN IAEMSAYTLTNLNAQLQRLIGAGARQFVILNLNDAGGTRPGYVDYNGKLPEDLARFSRQGVNVHLFDVSALLNQMRRNPS AYGLNDTPDVQCRYVPSCSGGSVELQNTYLTADGTHMMTSVHEYIARYLANQLNAPAAISTAPVLGLDVARAGALSALNA ADGGPLGPARVAWSDRLSLFADVGYTRNFHGAAGGMNAFDSDVEMFSIGADYKLSEASRAGALLSSGNANGSLAGGQGRI GLHAYRLGVYHAFERAGLFVRAYAGAGWSRYRLDRAAVLPGAVRASTSGFDFGALVKAGYLFALGGVRLGPVADVGYTQL VARGYTEDGDPILAQNVGVQRLKGVSAGAGVRFAAPLAAIGLRAGELSAEAQLRHDAFGDRTLVTAQRYAPGLPIGTAVD GASATYERLSVALTVNPAKRWRGKLVVQTDLGTAQRRSYTLLALLGGTF
Specific function: Unknown
COG id: COG3240
COG function: function code IR; Phospholipase/lecithinase/hemolysin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64322; Mature: 64190
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIGSKTKLALGIALAMPAAAWAYTFYALGDSLTDNGRVVRLTGILPNATSTIFRGGRSS CCCCCCCHHEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHCCCCCC NGPVWAEYLPGLIGARFAPDDDYAINGALSGHGGYLNIIPTRPTWRTLPGFADQVEQLIA CCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHH AHPRLRRDDLVGVWIGTNDQDLTKASLNGIEPFLGVPRPANIAEMSAYTLTNLNAQLQRL HCCCCCCCCEEEEEECCCCCHHHHHHHCCCCHHHCCCCCCCHHHHCEEEEECCHHHHHHH IGAGARQFVILNLNDAGGTRPGYVDYNGKLPEDLARFSRQGVNVHLFDVSALLNQMRRNP HCCCCCEEEEEEECCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHCCC SAYGLNDTPDVQCRYVPSCSGGSVELQNTYLTADGTHMMTSVHEYIARYLANQLNAPAAI CCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEE STAPVLGLDVARAGALSALNAADGGPLGPARVAWSDRLSLFADVGYTRNFHGAAGGMNAF CCCCEECHHHHHHCHHHHCCCCCCCCCCCCEEEHHHHHHHEECCCCCCCCCCCCCCCCCC DSDVEMFSIGADYKLSEASRAGALLSSGNANGSLAGGQGRIGLHAYRLGVYHAFERAGLF CCCCEEEEECCCCEECCHHHCCCEEECCCCCCEECCCCCCCEEEEEHHHHHHHHHHCCEE VRAYAGAGWSRYRLDRAAVLPGAVRASTSGFDFGALVKAGYLFALGGVRLGPVADVGYTQ EEEECCCCHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHCCEEEECCEEECCCCCCCHHH LVARGYTEDGDPILAQNVGVQRLKGVSAGAGVRFAAPLAAIGLRAGELSAEAQLRHDAFG HHHCCCCCCCCEEEECCCCHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCC DRTLVTAQRYAPGLPIGTAVDGASATYERLSVALTVNPAKRWRGKLVVQTDLGTAQRRSY CCEEEEHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECHHHHHCCEEEEEECCCCCCCCCE TLLALLGGTF EEEEEECCCC >Mature Secondary Structure TIGSKTKLALGIALAMPAAAWAYTFYALGDSLTDNGRVVRLTGILPNATSTIFRGGRSS CCCCCCHHEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHCCCCCC NGPVWAEYLPGLIGARFAPDDDYAINGALSGHGGYLNIIPTRPTWRTLPGFADQVEQLIA CCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHH AHPRLRRDDLVGVWIGTNDQDLTKASLNGIEPFLGVPRPANIAEMSAYTLTNLNAQLQRL HCCCCCCCCEEEEEECCCCCHHHHHHHCCCCHHHCCCCCCCHHHHCEEEEECCHHHHHHH IGAGARQFVILNLNDAGGTRPGYVDYNGKLPEDLARFSRQGVNVHLFDVSALLNQMRRNP HCCCCCEEEEEEECCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHCCC SAYGLNDTPDVQCRYVPSCSGGSVELQNTYLTADGTHMMTSVHEYIARYLANQLNAPAAI CCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEE STAPVLGLDVARAGALSALNAADGGPLGPARVAWSDRLSLFADVGYTRNFHGAAGGMNAF CCCCEECHHHHHHCHHHHCCCCCCCCCCCCEEEHHHHHHHEECCCCCCCCCCCCCCCCCC DSDVEMFSIGADYKLSEASRAGALLSSGNANGSLAGGQGRIGLHAYRLGVYHAFERAGLF CCCCEEEEECCCCEECCHHHCCCEEECCCCCCEECCCCCCCEEEEEHHHHHHHHHHCCEE VRAYAGAGWSRYRLDRAAVLPGAVRASTSGFDFGALVKAGYLFALGGVRLGPVADVGYTQ EEEECCCCHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHCCEEEECCEEECCCCCCCHHH LVARGYTEDGDPILAQNVGVQRLKGVSAGAGVRFAAPLAAIGLRAGELSAEAQLRHDAFG HHHCCCCCCCCEEEECCCCHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCC DRTLVTAQRYAPGLPIGTAVDGASATYERLSVALTVNPAKRWRGKLVVQTDLGTAQRRSY CCEEEEHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECHHHHHCCEEEEEECCCCCCCCCE TLLALLGGTF EEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA