| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is tkt [H]
Identifier: 126454749
GI number: 126454749
Start: 3374867
End: 3376939
Strand: Reverse
Name: tkt [H]
Synonym: BURPS1106A_3468
Alternate gene names: 126454749
Gene position: 3376939-3374867 (Counterclockwise)
Preceding gene: 126453801
Following gene: 126452201
Centisome position: 84.67
GC content: 68.26
Gene sequence:
>2073_bases ATGCCGCCCGTGCCCCGTTTTCTCGACTCGTTCTCCGGACTCGACATGACGACTTCGTCTCCCGCCTCCACCACTCTGAT GGCCAACGCGATCCGCGCGCTCGCGATGGACGCCGTCCAGCAAGCGAACTCCGGCCACCCCGGCATGCCGATGGGCATGG CCGAGATCGGCGTCGCGCTGTGGTCGCGCCACCTGAAGCACAACCCGACGAACCCGCATTGGGCCGACCGCGACCGCTTC GTGCTGTCGAACGGCCACGGCTCGATGCTGCTGTACTCGCTGCTGCACCTGACGGGCTACGATCTGCCGATCGAAGAGCT GAAGAATTTCCGGCAATTGCATTCGAAGACGCCGGGCCACCCGGAATACGGGATCACGCCGGGCGTCGAGACGACGACGG GCCCGCTCGGCCAGGGCCTCGCGAACGCGGTCGGCATGGCGCTCGGCGAGGCGCTGCTCGCCGCCGAGTTCAACCGCGAC GACGCGAAGATCGTCGATCATCACACGTACGTGTTCGTCGGCGACGGCTGCCTGATGGAGGGCATCTCGCACGAAGCGTG CTCGCTCGCGGGCACGCTCAAGCTCAACAAGCTGATCGCGTTCTACGACGACAACGGGATCTCGATCGACGGCGACGTCG TCAACTGGTTCCACGACGACACGCCGAAGCGCTTCGAGGCGTACGGCTGGAACGTGATTCCGAACGTGAACGGCCACGAC GTCGACGCGGTCGATGCCGCGATCGCGAAGGCGAAGAGCGCGGACAAGCCGACGCTCATCTGCTGCAAGACGGTGATCGG CAAGGGCGCGGCGACGAAGGCGGGCGGCCACGACGTGCACGGCGCGGCGCTCGGCGCGGAGGAAATCGCGAAGACGCGCG ACGCGCTCGGCTGGAAGTGGGCGCCGTTCGTGATTCCGCAGGAAGTCTACGCGGCGTGGGACGCGAAGGAAGCGGGCAAG CGCCGCGAAGGCGACTGGAACGCGGCGTTCGCGCAGTACCGCGCGAAGTACCCGGCCGAGGCCGCCGAATTCGAGCGTCG CATGGCGGGCAAGCTGCCGGCCGACTGGGCCGAGAAGGCCGCGGCGATCGTCGCCGGCGCGAACGAGCGCGGCGAGACGG TCGCGACGCGCAAGGCGTCGCAGCAGACGATCGAGGGCCTTGCCGCCGTGCTGCCCGAGCTGCTCGGCGGCTCGGCCGAC CTGACGGGCTCGAACCTCACGAACTGGAAGGCGTCGAAGGCGGTGCGCGCGAATGCGCACGGCGCGGGCATCCAGTGGGG CAACCACATCAACTACGGCGTGCGCGAATTCGGCATGAGCGCCGCGATCAACGGCCTCGTGCTGCACGGCGGCTACAAGC CGTTCGGCGGCACGTTCCTCACGTTCTCCGACTACAGCCGCAACGCGCTGCGCGTCGCCGCGCTGATGAAGGTGCCGTCG ATCTTCGTGTTCACGCACGATTCGATCGGCCTCGGCGAAGACGGGCCGACGCACCAGTCGGTCGAGCACGTCGCGAGCCT GCGGCTGATTCCGAACCTCGACGTCTGGCGCCCGGCCGACACGGTCGAGACGGCGGTCGCGTGGACCCACGCGGTCTCGC ACCAGCACCCGTCGTGCCTGGTCTTCAGCCGCCAGAACCTCGCGTTCAACGCGCGCACCGACGCGCAGCTCGCGAACATC GAGAAGGGCGGCTACGTGCTGCGCGACTGGGACGAAGAGATCGTCGCGCGCAAGATCATCCTGATCGCGACGGGCTCGGA AGTGGAGCTCGCGATGAAGGCGGTCGAGCCGCTCGCGCAGCAGGGGATCGCCGCGCGCGTCGTGTCGATGCCGTCGACCG ACGTGTTCGACCGGCAGGACGCCGAGTACCGCGAGCGCGTGCTGCCGCACGGCGTGCGCCGCGTCGCGATCGAAGCGGGC GTCACCGATTTCTGGCGCAAGTACGTGGGCCTCGAAGGCGGCGTGGTCGGCATCGACACGTTCGGCGAGTCGGCTCCGGC TGGCGTGTTGTTCAAGCATTTCGGCTTCACGATCGAGCACGTGGTCGAAACGGCGAAGGCGGTGCTCGCGTAA
Upstream 100 bases:
>100_bases TTAAAATGACCAGCTTTGCAGCCTCGTCCGTCTGCTCGTCCGCTTCGCCTCCCGCCGGCGCCGCACCGCGCGCCGGAAAC GGTTGGCCCGCGAGCCTCGG
Downstream 100 bases:
>100_bases CCCATTCGACGCCCGGGCGGCCGTGCCCCGCGCCGGCCGGGCGCGCGTGAAGCTGCACGAAGTATTTTTTCAGCCATCAG GAGATACATCATGACGATTC
Product: transketolase
Products: NA
Alternate protein names: TK 1 [H]
Number of amino acids: Translated: 690; Mature: 689
Protein sequence:
>690_residues MPPVPRFLDSFSGLDMTTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRF VLSNGHGSMLLYSLLHLTGYDLPIEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRD DAKIVDHHTYVFVGDGCLMEGISHEACSLAGTLKLNKLIAFYDDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGHD VDAVDAAIAKAKSADKPTLICCKTVIGKGAATKAGGHDVHGAALGAEEIAKTRDALGWKWAPFVIPQEVYAAWDAKEAGK RREGDWNAAFAQYRAKYPAEAAEFERRMAGKLPADWAEKAAAIVAGANERGETVATRKASQQTIEGLAAVLPELLGGSAD LTGSNLTNWKASKAVRANAHGAGIQWGNHINYGVREFGMSAAINGLVLHGGYKPFGGTFLTFSDYSRNALRVAALMKVPS IFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVETAVAWTHAVSHQHPSCLVFSRQNLAFNARTDAQLANI EKGGYVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPSTDVFDRQDAEYRERVLPHGVRRVAIEAG VTDFWRKYVGLEGGVVGIDTFGESAPAGVLFKHFGFTIEHVVETAKAVLA
Sequences:
>Translated_690_residues MPPVPRFLDSFSGLDMTTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRF VLSNGHGSMLLYSLLHLTGYDLPIEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRD DAKIVDHHTYVFVGDGCLMEGISHEACSLAGTLKLNKLIAFYDDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGHD VDAVDAAIAKAKSADKPTLICCKTVIGKGAATKAGGHDVHGAALGAEEIAKTRDALGWKWAPFVIPQEVYAAWDAKEAGK RREGDWNAAFAQYRAKYPAEAAEFERRMAGKLPADWAEKAAAIVAGANERGETVATRKASQQTIEGLAAVLPELLGGSAD LTGSNLTNWKASKAVRANAHGAGIQWGNHINYGVREFGMSAAINGLVLHGGYKPFGGTFLTFSDYSRNALRVAALMKVPS IFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVETAVAWTHAVSHQHPSCLVFSRQNLAFNARTDAQLANI EKGGYVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPSTDVFDRQDAEYRERVLPHGVRRVAIEAG VTDFWRKYVGLEGGVVGIDTFGESAPAGVLFKHFGFTIEHVVETAKAVLA >Mature_689_residues PPVPRFLDSFSGLDMTTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFV LSNGHGSMLLYSLLHLTGYDLPIEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDD AKIVDHHTYVFVGDGCLMEGISHEACSLAGTLKLNKLIAFYDDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGHDV DAVDAAIAKAKSADKPTLICCKTVIGKGAATKAGGHDVHGAALGAEEIAKTRDALGWKWAPFVIPQEVYAAWDAKEAGKR REGDWNAAFAQYRAKYPAEAAEFERRMAGKLPADWAEKAAAIVAGANERGETVATRKASQQTIEGLAAVLPELLGGSADL TGSNLTNWKASKAVRANAHGAGIQWGNHINYGVREFGMSAAINGLVLHGGYKPFGGTFLTFSDYSRNALRVAALMKVPSI FVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVETAVAWTHAVSHQHPSCLVFSRQNLAFNARTDAQLANIE KGGYVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPSTDVFDRQDAEYRERVLPHGVRRVAIEAGV TDFWRKYVGLEGGVVGIDTFGESAPAGVLFKHFGFTIEHVVETAKAVLA
Specific function: Unknown
COG id: COG0021
COG function: function code G; Transketolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transketolase family [H]
Homologues:
Organism=Homo sapiens, GI205277463, Length=607, Percent_Identity=27.1828665568369, Blast_Score=157, Evalue=2e-38, Organism=Homo sapiens, GI4507521, Length=607, Percent_Identity=27.1828665568369, Blast_Score=157, Evalue=2e-38, Organism=Homo sapiens, GI133778974, Length=263, Percent_Identity=33.0798479087452, Blast_Score=109, Evalue=1e-23, Organism=Escherichia coli, GI48994911, Length=671, Percent_Identity=63.6363636363636, Blast_Score=877, Evalue=0.0, Organism=Escherichia coli, GI1788808, Length=666, Percent_Identity=61.4114114114114, Blast_Score=823, Evalue=0.0, Organism=Caenorhabditis elegans, GI17539652, Length=680, Percent_Identity=26.0294117647059, Blast_Score=154, Evalue=2e-37, Organism=Saccharomyces cerevisiae, GI6325331, Length=672, Percent_Identity=49.702380952381, Blast_Score=613, Evalue=1e-176, Organism=Saccharomyces cerevisiae, GI6319593, Length=674, Percent_Identity=45.6973293768546, Blast_Score=557, Evalue=1e-159, Organism=Drosophila melanogaster, GI24666278, Length=263, Percent_Identity=34.2205323193916, Blast_Score=125, Evalue=1e-28, Organism=Drosophila melanogaster, GI45551847, Length=309, Percent_Identity=32.3624595469256, Blast_Score=122, Evalue=7e-28, Organism=Drosophila melanogaster, GI45550715, Length=309, Percent_Identity=32.3624595469256, Blast_Score=122, Evalue=7e-28, Organism=Drosophila melanogaster, GI24645119, Length=260, Percent_Identity=33.0769230769231, Blast_Score=102, Evalue=7e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005475 - InterPro: IPR005478 - InterPro: IPR020826 - InterPro: IPR005476 - InterPro: IPR005474 [H]
Pfam domain/function: PF02779 Transket_pyr; PF02780 Transketolase_C; PF00456 Transketolase_N [H]
EC number: =2.2.1.1 [H]
Molecular weight: Translated: 74355; Mature: 74224
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: PS00801 TRANSKETOLASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPVPRFLDSFSGLDMTTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVAL CCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH WSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLPIEELKNFRQLHSKTPGH HHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC PEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFVGDGCLME CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECEEEEEECCCHHHH GISHEACSLAGTLKLNKLIAFYDDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGHD CCCHHHHHHHHHEEEEEEEEEECCCCCEECCCEEECCCCCCCCHHHHCCCEECCCCCCCC VDAVDAAIAKAKSADKPTLICCKTVIGKGAATKAGGHDVHGAALGAEEIAKTRDALGWKW CHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCC APFVIPQEVYAAWDAKEAGKRREGDWNAAFAQYRAKYPAEAAEFERRMAGKLPADWAEKA CCCCCCHHHHHHCCHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHH AAIVAGANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANAH EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCC GAGIQWGNHINYGVREFGMSAAINGLVLHGGYKPFGGTFLTFSDYSRNALRVAALMKVPS CCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHCCE IFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVETAVAWTHAVSHQHPSCL EEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE VFSRQNLAFNARTDAQLANIEKGGYVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQ EEECCCCEEECCCCCHHHCCCCCCEEEECCHHHHHHCEEEEEEECCHHHHHHHHHHHHHH QGIAARVVSMPSTDVFDRQDAEYRERVLPHGVRRVAIEAGVTDFWRKYVGLEGGVVGIDT CCHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEEC FGESAPAGVLFKHFGFTIEHVVETAKAVLA CCCCCCCHHHHHHHCCHHHHHHHHHHHHCC >Mature Secondary Structure PPVPRFLDSFSGLDMTTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVAL CCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH WSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLPIEELKNFRQLHSKTPGH HHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC PEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFVGDGCLME CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECEEEEEECCCHHHH GISHEACSLAGTLKLNKLIAFYDDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGHD CCCHHHHHHHHHEEEEEEEEEECCCCCEECCCEEECCCCCCCCHHHHCCCEECCCCCCCC VDAVDAAIAKAKSADKPTLICCKTVIGKGAATKAGGHDVHGAALGAEEIAKTRDALGWKW CHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCC APFVIPQEVYAAWDAKEAGKRREGDWNAAFAQYRAKYPAEAAEFERRMAGKLPADWAEKA CCCCCCHHHHHHCCHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHH AAIVAGANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANAH EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCC GAGIQWGNHINYGVREFGMSAAINGLVLHGGYKPFGGTFLTFSDYSRNALRVAALMKVPS CCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHCCE IFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVETAVAWTHAVSHQHPSCL EEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE VFSRQNLAFNARTDAQLANIEKGGYVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQ EEECCCCEEECCCCCHHHCCCCCCEEEECCHHHHHHCEEEEEEECCHHHHHHHHHHHHHH QGIAARVVSMPSTDVFDRQDAEYRERVLPHGVRRVAIEAGVTDFWRKYVGLEGGVVGIDT CCHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEEC FGESAPAGVLFKHFGFTIEHVVETAKAVLA CCCCCCCHHHHHHHCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA