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The map label for this gene is yncB [H]

Identifier: 126454508

GI number: 126454508

Start: 2301943

End: 2302941

Strand: Reverse

Name: yncB [H]

Synonym: BURPS1106A_2326

Alternate gene names: 126454508

Gene position: 2302941-2301943 (Counterclockwise)

Preceding gene: 126453624

Following gene: 126452981

Centisome position: 57.74

GC content: 71.67

Gene sequence:

>999_bases
ATGTCACAGGTCAACCGGCGGGTGCTGCTCGTGTCGCGCCCCGAACGCGAGGCGCGCGTCGAGAACTTCGAACTCGTCGA
GACGCCGCTTGCGCCGCTCGCCGTAGGCGAGGTGCGCGTGCGCAATCATTTTCTGTCGATCGATCCGTACATGCGCGGGC
GGATGAACGCGGGGCGCTCGTACGCCGAGCCGCAACCGCTCGGCGAGGTGATGGGCGGCGGCACCGCCGGCGAGGTCGTC
GAGTCGCGCAATCCGGCGTTCGCCCCCGGCGATCGCGTGATCGGCGCGTACGGCTGGCAGGAGTACGGCACGTCGGCGGG
CAAGGAACTGCGCAAGGTCGACACGACGCGCGTGCCGCTGTCCGCGTATCTCGGAGCCGCCGGAATGCCCGGCGTGACCG
CGTGGTACGGCCTGAACCGGATCATCCGGCCGCGCGCGGGCGAGACGCTCGTCGTCAGCGCGGCGAGCGGCGCGGTCGGC
AGCGTGGTCGGGCAGCTCGCGAAGCTCGCCGGGTGTCGCGCGGTCGGCATCGCGGGCGGCGCGGACAAGTGCCGCTACGT
CGTCGATACGCTCGGCTTCGATGCGTGCGTCGACTACAAGGCGGGCCGGCTCGCCGACGATCTCGCGGCCGCCGCGCCGG
ACGGCGTCGACGGCTGTTTCGAGAACGTCGGCGGCGCGGTGCTCGATGCGACGCTCGCGCGGATGAACCCGTTCGGGCGC
ATCGCGATGTGCGGGATGATCGCCGCGTACGACGGCGCGCCCGCGCCGCTCGCGAACCCGGCGCTGATCCTGCGCGAGCG
GCTGCTCGTGCAGGGCTTCATCGTGTCCGAGCACTTCGACGTGTGGCCCGAGGCGCTCGCGCAGCTCGCGTCGCTCGTCG
CGAACAGGCAGCTGCATTATCGGGAGACGATCGCGCAGGGCCTCGAGCGCGCGCCCGACGCGCTGCTCGGGCTGCTGAAA
GGGCGCAATTTCGGCAAGCAGCTCGTCGCGCTCGTCTGA

Upstream 100 bases:

>100_bases
GACGCATGACGCGAGCGGGCGGCCCCGCCCGTCGGCGGAGCCGTTTGCCGTCGGCGCGGCCGCGCGCGCGACGACGGCCC
GATGCACGAGGAGGCAGGCA

Downstream 100 bases:

>100_bases
CGCGCCGTGGCATCATACGGCGCTTGTCCCGGGCCTTTCACCGGCGCGCCCGCGCCGTTCGCCCGCCGTTTGCGTTGCTG
TTTGCCCCGCCGTTTGCCCT

Product: zinc-binding dehydrogenase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MSQVNRRVLLVSRPEREARVENFELVETPLAPLAVGEVRVRNHFLSIDPYMRGRMNAGRSYAEPQPLGEVMGGGTAGEVV
ESRNPAFAPGDRVIGAYGWQEYGTSAGKELRKVDTTRVPLSAYLGAAGMPGVTAWYGLNRIIRPRAGETLVVSAASGAVG
SVVGQLAKLAGCRAVGIAGGADKCRYVVDTLGFDACVDYKAGRLADDLAAAAPDGVDGCFENVGGAVLDATLARMNPFGR
IAMCGMIAAYDGAPAPLANPALILRERLLVQGFIVSEHFDVWPEALAQLASLVANRQLHYRETIAQGLERAPDALLGLLK
GRNFGKQLVALV

Sequences:

>Translated_332_residues
MSQVNRRVLLVSRPEREARVENFELVETPLAPLAVGEVRVRNHFLSIDPYMRGRMNAGRSYAEPQPLGEVMGGGTAGEVV
ESRNPAFAPGDRVIGAYGWQEYGTSAGKELRKVDTTRVPLSAYLGAAGMPGVTAWYGLNRIIRPRAGETLVVSAASGAVG
SVVGQLAKLAGCRAVGIAGGADKCRYVVDTLGFDACVDYKAGRLADDLAAAAPDGVDGCFENVGGAVLDATLARMNPFGR
IAMCGMIAAYDGAPAPLANPALILRERLLVQGFIVSEHFDVWPEALAQLASLVANRQLHYRETIAQGLERAPDALLGLLK
GRNFGKQLVALV
>Mature_331_residues
SQVNRRVLLVSRPEREARVENFELVETPLAPLAVGEVRVRNHFLSIDPYMRGRMNAGRSYAEPQPLGEVMGGGTAGEVVE
SRNPAFAPGDRVIGAYGWQEYGTSAGKELRKVDTTRVPLSAYLGAAGMPGVTAWYGLNRIIRPRAGETLVVSAASGAVGS
VVGQLAKLAGCRAVGIAGGADKCRYVVDTLGFDACVDYKAGRLADDLAAAAPDGVDGCFENVGGAVLDATLARMNPFGRI
AMCGMIAAYDGAPAPLANPALILRERLLVQGFIVSEHFDVWPEALAQLASLVANRQLHYRETIAQGLERAPDALLGLLKG
RNFGKQLVALV

Specific function: Unknown

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226059159, Length=315, Percent_Identity=41.2698412698413, Blast_Score=215, Evalue=5e-56,
Organism=Homo sapiens, GI226059133, Length=315, Percent_Identity=41.2698412698413, Blast_Score=215, Evalue=5e-56,
Organism=Homo sapiens, GI226246682, Length=343, Percent_Identity=38.7755102040816, Blast_Score=208, Evalue=4e-54,
Organism=Homo sapiens, GI226246680, Length=343, Percent_Identity=38.7755102040816, Blast_Score=208, Evalue=4e-54,
Organism=Homo sapiens, GI22748929, Length=343, Percent_Identity=38.7755102040816, Blast_Score=208, Evalue=4e-54,
Organism=Homo sapiens, GI226056130, Length=260, Percent_Identity=42.3076923076923, Blast_Score=183, Evalue=2e-46,
Organism=Homo sapiens, GI28557745, Length=215, Percent_Identity=27.906976744186, Blast_Score=82, Evalue=5e-16,
Organism=Escherichia coli, GI226510941, Length=335, Percent_Identity=45.9701492537313, Blast_Score=291, Evalue=5e-80,
Organism=Caenorhabditis elegans, GI133901710, Length=349, Percent_Identity=34.0974212034384, Blast_Score=171, Evalue=5e-43,
Organism=Caenorhabditis elegans, GI133901712, Length=349, Percent_Identity=34.0974212034384, Blast_Score=171, Evalue=6e-43,
Organism=Caenorhabditis elegans, GI17507255, Length=234, Percent_Identity=31.1965811965812, Blast_Score=68, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6323504, Length=328, Percent_Identity=31.4024390243902, Blast_Score=125, Evalue=9e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35173; Mature: 35042

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVNRRVLLVSRPEREARVENFELVETPLAPLAVGEVRVRNHFLSIDPYMRGRMNAGRS
CCCCCCEEEEEECCCHHHHCCCCHHHHCCCCCHHHHHHHHHHEEEECCHHHHHHCCCCCC
YAEPQPLGEVMGGGTAGEVVESRNPAFAPGDRVIGAYGWQEYGTSAGKELRKVDTTRVPL
CCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCEEECCCCHHHCCHHHHHHHHHCCCCCCH
SAYLGAAGMPGVTAWYGLNRIIRPRAGETLVVSAASGAVGSVVGQLAKLAGCRAVGIAGG
HHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEECCCC
ADKCRYVVDTLGFDACVDYKAGRLADDLAAAAPDGVDGCFENVGGAVLDATLARMNPFGR
CHHHHHHHHHCCCHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHCCCCCH
IAMCGMIAAYDGAPAPLANPALILRERLLVQGFIVSEHFDVWPEALAQLASLVANRQLHY
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
RETIAQGLERAPDALLGLLKGRNFGKQLVALV
HHHHHHHHHHCHHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure 
SQVNRRVLLVSRPEREARVENFELVETPLAPLAVGEVRVRNHFLSIDPYMRGRMNAGRS
CCCCCEEEEEECCCHHHHCCCCHHHHCCCCCHHHHHHHHHHEEEECCHHHHHHCCCCCC
YAEPQPLGEVMGGGTAGEVVESRNPAFAPGDRVIGAYGWQEYGTSAGKELRKVDTTRVPL
CCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCEEECCCCHHHCCHHHHHHHHHCCCCCCH
SAYLGAAGMPGVTAWYGLNRIIRPRAGETLVVSAASGAVGSVVGQLAKLAGCRAVGIAGG
HHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEECCCC
ADKCRYVVDTLGFDACVDYKAGRLADDLAAAAPDGVDGCFENVGGAVLDATLARMNPFGR
CHHHHHHHHHCCCHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHCCCCCH
IAMCGMIAAYDGAPAPLANPALILRERLLVQGFIVSEHFDVWPEALAQLASLVANRQLHY
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
RETIAQGLERAPDALLGLLKGRNFGKQLVALV
HHHHHHHHHHCHHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]