BacMap

Definition	Burkholderia pseudomallei 1106a chromosome I, complete genome.
Accession	NC_009076
Length	3,988,455

Click here to switch to the map view.

The map label for this gene is 126454312

Identifier: 126454312

GI number: 126454312

Start: 3984390

End: 3984902

Strand: Reverse

Name: 126454312

Synonym: BURPS1106A_4081

Alternate gene names: NA

Gene position: 3984902-3984390 (Counterclockwise)

Preceding gene: 126451506

Following gene: 126453738

Centisome position: 99.91

GC content: 60.43

Gene sequence:

>513_bases
ATGAGTTCACGCAGGATCGTGGTACGCCGCTCGGGCGTTCACGGCAAGGGCGTATTCGCCGCGGTACCGATCAAGGCGGG
AGAGCGCGTAGTCGAATACAAGGGCGAGCGAATCTCGTGGAAAGAGGCGCTGCGCCGCCATCCGCACGACCCGGACGATC
CGAATCACACGTTTTACTTCGCGCTGGAAGAGGGCGGGGTGATCGACGGCAAGATCAACGGCAACAGCGCGCGCTGGATC
AACCATTCGTGCGCGCCGAACTGCGAAGCCGAGGAAGTGGGCGGGCGCGTGTACATCCATGCGCTGCGTGACATCGACGA
GCAGGAAGAACTGTTCTACGACTACGGTCTCGTGATCGACGCGCGCCTGACGAAAAAGCTCAAGCGCGAATACGCGTGCC
ATTGCGGCGCGGCGACGTGCCGCGGCACGCTGCTTGCAACGTCGGAAGAAGACGAAGGCAAGAAAAAGAAGAAGGCGAAG
AAAGGCGGCAAGGACAAGAAAAAGAAGAAGTGA

Upstream 100 bases:

>100_bases
ATGATGGCCGCCTGCGGCGCGACGGGCCAAGCCGCGCGGCCGGCACGCAATGCGCGGCGCGATCGTTTCAGTTTCAAGTC
GTCTTCAAAGGATTCGTTCG

Downstream 100 bases:

>100_bases
CGCCCGGCGGCGGTGCGCGGCAAGCTCGCGCGGCCGCCGCGGTTTCCCGGCGTTCGAATCGGCGTTCGAATCGAAGAAGG
CGGTCCCCGCGTTATTCGTT

Product: SET domain-containing protein

Products: NA

Alternate protein names: Histone-Lysine N-Methyltransferase; SET Domain-Containing Protein; SET Domain Protein; Set Domain Protein; HistoNe-Lysine N-Methyltransferase H3 Lysine-4 Specific; Setd1a Protein; Nuclear Protein Set; Zinc Finger Protein

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MSSRRIVVRRSGVHGKGVFAAVPIKAGERVVEYKGERISWKEALRRHPHDPDDPNHTFYFALEEGGVIDGKINGNSARWI
NHSCAPNCEAEEVGGRVYIHALRDIDEQEELFYDYGLVIDARLTKKLKREYACHCGAATCRGTLLATSEEDEGKKKKKAK
KGGKDKKKKK

Sequences:

>Translated_170_residues
MSSRRIVVRRSGVHGKGVFAAVPIKAGERVVEYKGERISWKEALRRHPHDPDDPNHTFYFALEEGGVIDGKINGNSARWI
NHSCAPNCEAEEVGGRVYIHALRDIDEQEELFYDYGLVIDARLTKKLKREYACHCGAATCRGTLLATSEEDEGKKKKKAK
KGGKDKKKKK
>Mature_169_residues
SSRRIVVRRSGVHGKGVFAAVPIKAGERVVEYKGERISWKEALRRHPHDPDDPNHTFYFALEEGGVIDGKINGNSARWIN
HSCAPNCEAEEVGGRVYIHALRDIDEQEELFYDYGLVIDARLTKKLKREYACHCGAATCRGTLLATSEEDEGKKKKKAKK
GGKDKKKKK

Specific function: Unknown

COG id: COG2940

COG function: function code R; Proteins containing SET domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI56550039, Length=147, Percent_Identity=35.3741496598639, Blast_Score=88, Evalue=3e-18,
Organism=Homo sapiens, GI91718902, Length=140, Percent_Identity=35.7142857142857, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI110349788, Length=169, Percent_Identity=33.1360946745562, Blast_Score=83, Evalue=1e-16,
Organism=Homo sapiens, GI7662046, Length=144, Percent_Identity=36.8055555555556, Blast_Score=83, Evalue=1e-16,
Organism=Homo sapiens, GI210032580, Length=139, Percent_Identity=35.2517985611511, Blast_Score=81, Evalue=5e-16,
Organism=Homo sapiens, GI55741677, Length=146, Percent_Identity=32.1917808219178, Blast_Score=76, Evalue=1e-14,
Organism=Homo sapiens, GI19913358, Length=136, Percent_Identity=37.5, Blast_Score=74, Evalue=6e-14,
Organism=Homo sapiens, GI19913350, Length=136, Percent_Identity=37.5, Blast_Score=74, Evalue=6e-14,
Organism=Homo sapiens, GI19913348, Length=136, Percent_Identity=37.5, Blast_Score=74, Evalue=6e-14,
Organism=Homo sapiens, GI109633019, Length=136, Percent_Identity=37.5, Blast_Score=74, Evalue=6e-14,
Organism=Homo sapiens, GI148762969, Length=140, Percent_Identity=35, Blast_Score=70, Evalue=7e-13,
Organism=Homo sapiens, GI197313748, Length=159, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=3e-12,
Organism=Homo sapiens, GI23510384, Length=118, Percent_Identity=39.8305084745763, Blast_Score=68, Evalue=3e-12,
Organism=Homo sapiens, GI13699811, Length=168, Percent_Identity=34.5238095238095, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI13375930, Length=158, Percent_Identity=34.1772151898734, Blast_Score=67, Evalue=5e-12,
Organism=Homo sapiens, GI301171597, Length=158, Percent_Identity=34.1772151898734, Blast_Score=67, Evalue=5e-12,
Organism=Homo sapiens, GI301171588, Length=158, Percent_Identity=34.1772151898734, Blast_Score=67, Evalue=6e-12,
Organism=Homo sapiens, GI19923586, Length=140, Percent_Identity=35.7142857142857, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI21361095, Length=118, Percent_Identity=39.8305084745763, Blast_Score=64, Evalue=5e-11,
Organism=Homo sapiens, GI27477095, Length=140, Percent_Identity=35.7142857142857, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI193210440, Length=143, Percent_Identity=33.5664335664336, Blast_Score=77, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17552316, Length=140, Percent_Identity=36.4285714285714, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17552318, Length=146, Percent_Identity=35.6164383561644, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17552320, Length=146, Percent_Identity=35.6164383561644, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71993684, Length=161, Percent_Identity=32.9192546583851, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI25148426, Length=148, Percent_Identity=37.8378378378378, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI25148423, Length=140, Percent_Identity=39.2857142857143, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17565204, Length=160, Percent_Identity=30.625, Blast_Score=66, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6321911, Length=144, Percent_Identity=38.8888888888889, Blast_Score=88, Evalue=9e-19,
Organism=Drosophila melanogaster, GI62472551, Length=141, Percent_Identity=34.7517730496454, Blast_Score=85, Evalue=2e-17,
Organism=Drosophila melanogaster, GI17136558, Length=141, Percent_Identity=34.7517730496454, Blast_Score=85, Evalue=2e-17,
Organism=Drosophila melanogaster, GI19550181, Length=141, Percent_Identity=34.7517730496454, Blast_Score=85, Evalue=2e-17,
Organism=Drosophila melanogaster, GI19550184, Length=141, Percent_Identity=34.7517730496454, Blast_Score=85, Evalue=3e-17,
Organism=Drosophila melanogaster, GI17136556, Length=141, Percent_Identity=34.7517730496454, Blast_Score=85, Evalue=3e-17,
Organism=Drosophila melanogaster, GI281360813, Length=153, Percent_Identity=35.2941176470588, Blast_Score=81, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24641786, Length=153, Percent_Identity=35.2941176470588, Blast_Score=81, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24650756, Length=164, Percent_Identity=34.7560975609756, Blast_Score=81, Evalue=4e-16,
Organism=Drosophila melanogaster, GI28571451, Length=140, Percent_Identity=35.7142857142857, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24639197, Length=140, Percent_Identity=35.7142857142857, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI17737643, Length=154, Percent_Identity=33.7662337662338, Blast_Score=76, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19123; Mature: 18992

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50280 SET ; PS50868 POST_SET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRRIVVRRSGVHGKGVFAAVPIKAGERVVEYKGERISWKEALRRHPHDPDDPNHTFYF
CCCCEEEEEECCCCCCCEEEEECCCCCCEEEECCCCEECHHHHHHCCCCCCCCCCCEEEE
ALEEGGVIDGKINGNSARWINHSCAPNCEAEEVGGRVYIHALRDIDEQEELFYDYGLVID
EECCCCEEEEEECCCCCEEECCCCCCCCCHHHCCCEEEEEEECCCCHHHHHHHHCCEEEE
ARLTKKLKREYACHCGAATCRGTLLATSEEDEGKKKKKAKKGGKDKKKKK
HHHHHHHHHHHHHCCCCHHHCCEEEECCCCCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SSRRIVVRRSGVHGKGVFAAVPIKAGERVVEYKGERISWKEALRRHPHDPDDPNHTFYF
CCCEEEEEECCCCCCCEEEEECCCCCCEEEECCCCEECHHHHHHCCCCCCCCCCCEEEE
ALEEGGVIDGKINGNSARWINHSCAPNCEAEEVGGRVYIHALRDIDEQEELFYDYGLVID
EECCCCEEEEEECCCCCEEECCCCCCCCCHHHCCCEEEEEEECCCCHHHHHHHHCCEEEE
ARLTKKLKREYACHCGAATCRGTLLATSEEDEGKKKKKAKKGGKDKKKKK
HHHHHHHHHHHHHCCCCHHHCCEEEECCCCCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA