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The map label for this gene is 126454294

Identifier: 126454294

GI number: 126454294

Start: 480636

End: 481253

Strand: Direct

Name: 126454294

Synonym: BURPS1106A_0518

Alternate gene names: NA

Gene position: 480636-481253 (Clockwise)

Preceding gene: 126453695

Following gene: 126454602

Centisome position: 12.05

GC content: 67.15

Gene sequence:

>618_bases
ATGCTCAAAACCCTGTTTGCACGCCGCCGCGCGCAGCGCGGCTGGCTGTTCGCCTGCGCGCTCGCGGGCGCGATGCTGAT
TGCGGGCTGCAACCGGCAGCCGGCGTTCCAGAATCTCGACATCACCGGCAACTCGCAGTTCGCGAGCGACTTCGCGCTGC
CGGACACGGCGGGCAAGATCCGCACGCTCGGCGAGTTCAAGGGCAAGGCGGTCGTCGTGTTCTTCGGCTATACGCACTGC
CCCGACGTGTGCCCGACAACGATGGCGGAACTCTCGCAGGCGCTGCAGCAGCTCGGCCCGGACGGCAAGCGCGTGCAGGT
GCTGTTCGTCACCGTCGATCCGGAGCGCGACACCGCGGCGCTTCTCGGCCAGTACGTGCCGGCGTTCAACCCGGCGTTCA
TCGGCCTGCGGCCCGCCGACGAAGCGCAACTGAAGAAGGTGACGAAGGATTTCCGCGTCTACTACGCGAAGGTGCCGGGC
AAGACGCCCGGCAGCTATACGATGGACCACACCGCGGCGAGCTATGTGTTCGATCCGAACGGCAAGCTGCGCTTGTTCGT
GCGCGACGGCCAGGGCCCCGGCCCGTGGGTCCACGATCTGAAGCTGCTGCTCGACTGA

Upstream 100 bases:

>100_bases
CGCTATTCGATCGTCTATCTGTCGCTGCTGTTCGCGGCGCTTTTGGTCGACCACTACGCACGTCCCGTGATCGGGATGTA
ACTCCAACGGTTCGATTCCG

Downstream 100 bases:

>100_bases
CGCCGGCGCGCGCGGCCGTGCGCCGGCGCGACATGCACCCCGGAGCGCCGGACCTTCGTCCGGCGCTCCGGGGTGTTTTT
CATGACGGCAGCGCAGGCAG

Product: SCO1/SenC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MLKTLFARRRAQRGWLFACALAGAMLIAGCNRQPAFQNLDITGNSQFASDFALPDTAGKIRTLGEFKGKAVVVFFGYTHC
PDVCPTTMAELSQALQQLGPDGKRVQVLFVTVDPERDTAALLGQYVPAFNPAFIGLRPADEAQLKKVTKDFRVYYAKVPG
KTPGSYTMDHTAASYVFDPNGKLRLFVRDGQGPGPWVHDLKLLLD

Sequences:

>Translated_205_residues
MLKTLFARRRAQRGWLFACALAGAMLIAGCNRQPAFQNLDITGNSQFASDFALPDTAGKIRTLGEFKGKAVVVFFGYTHC
PDVCPTTMAELSQALQQLGPDGKRVQVLFVTVDPERDTAALLGQYVPAFNPAFIGLRPADEAQLKKVTKDFRVYYAKVPG
KTPGSYTMDHTAASYVFDPNGKLRLFVRDGQGPGPWVHDLKLLLD
>Mature_205_residues
MLKTLFARRRAQRGWLFACALAGAMLIAGCNRQPAFQNLDITGNSQFASDFALPDTAGKIRTLGEFKGKAVVVFFGYTHC
PDVCPTTMAELSQALQQLGPDGKRVQVLFVTVDPERDTAALLGQYVPAFNPAFIGLRPADEAQLKKVTKDFRVYYAKVPG
KTPGSYTMDHTAASYVFDPNGKLRLFVRDGQGPGPWVHDLKLLLD

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=134, Percent_Identity=38.8059701492537, Blast_Score=110, Evalue=7e-25,
Organism=Homo sapiens, GI281182722, Length=134, Percent_Identity=38.8059701492537, Blast_Score=110, Evalue=7e-25,
Organism=Homo sapiens, GI281182716, Length=134, Percent_Identity=38.8059701492537, Blast_Score=110, Evalue=7e-25,
Organism=Homo sapiens, GI153791313, Length=134, Percent_Identity=38.8059701492537, Blast_Score=110, Evalue=7e-25,
Organism=Homo sapiens, GI4759068, Length=146, Percent_Identity=32.1917808219178, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17531419, Length=145, Percent_Identity=31.7241379310345, Blast_Score=97, Evalue=4e-21,
Organism=Saccharomyces cerevisiae, GI6319498, Length=135, Percent_Identity=37.037037037037, Blast_Score=98, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6319511, Length=143, Percent_Identity=34.2657342657343, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI19920710, Length=143, Percent_Identity=35.6643356643357, Blast_Score=114, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22499; Mature: 22499

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKTLFARRRAQRGWLFACALAGAMLIAGCNRQPAFQNLDITGNSQFASDFALPDTAGKI
CCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHH
RTLGEFKGKAVVVFFGYTHCPDVCPTTMAELSQALQQLGPDGKRVQVLFVTVDPERDTAA
HHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHH
LLGQYVPAFNPAFIGLRPADEAQLKKVTKDFRVYYAKVPGKTPGSYTMDHTAASYVFDPN
HHHHHCCCCCCEEEECCCCCHHHHHHHHHHHEEEEEECCCCCCCCEEECCCCEEEEECCC
GKLRLFVRDGQGPGPWVHDLKLLLD
CCEEEEEECCCCCCCHHHHHHEECC
>Mature Secondary Structure
MLKTLFARRRAQRGWLFACALAGAMLIAGCNRQPAFQNLDITGNSQFASDFALPDTAGKI
CCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHH
RTLGEFKGKAVVVFFGYTHCPDVCPTTMAELSQALQQLGPDGKRVQVLFVTVDPERDTAA
HHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHH
LLGQYVPAFNPAFIGLRPADEAQLKKVTKDFRVYYAKVPGKTPGSYTMDHTAASYVFDPN
HHHHHCCCCCCEEEECCCCCHHHHHHHHHHHEEEEEECCCCCCCCEEECCCCEEEEECCC
GKLRLFVRDGQGPGPWVHDLKLLLD
CCEEEEEECCCCCCCHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA