Click here to switch to the map view.

The map label for this gene is secB

Identifier: 126454083

GI number: 126454083

Start: 465672

End: 466151

Strand: Direct

Name: secB

Synonym: BURPS1106A_0500

Alternate gene names: 126454083

Gene position: 465672-466151 (Clockwise)

Preceding gene: 126454979

Following gene: 126451689

Centisome position: 11.68

GC content: 62.92

Gene sequence:

>480_bases
ATGTCCGACGTCGAAAACCAACCGTTCTTCAACATCCAGCGCATCTACCTGAAGGACCTGTCGCTCGAGCAGCCGAATTC
GCCCGCGATCTTCCTCGAGCAGGAGATGCCCGCCGTTGAAGTCGAGGTCGACGTGAAGGCCGAACGCCTTGCCGAGAACG
TCTACGAGATCGTCGTCGCGGGCACCGTCACCGCGAAGGTGCGCGAGAAGGTCGCGTTCCTCGTCGAAGCGAAGCAGGCC
GGCATTTTCGACATCCGCAACATCCCGGCCGAGCAGATCGATCCGCTGTGCGGCATCGCGTGCCCGACGATCCTGTTTCC
GTACCTGCGCTCGAACATCGCCGATTCGATCACCCGCGCGGGCTTCCCGCCGATCCACCTCGCCGAGATCAACTTCCAGG
CGCTGTACGAGCAGCGCCTCGCCGAAATCTCGCAGCAACAACAGCAAGGCGGCGCGCCGAACGGCACGACGCTGAACTGA

Upstream 100 bases:

>100_bases
GCGCGGCCGCCGTCTTGCGGGCGGCGCGCGGTCCAAGCACGATCGCACCGGGCGTGCCGGAGGGTTCCGGCCGCCGCGAA
ATCATTTTTAGGGAGCCACC

Downstream 100 bases:

>100_bases
GCATGAGCGAGAACCGGTGCTGAGCATGAAAGTCGCGGTTCTCGGCGCCGGCGCGTGGGGCACCGCGCTCGCGGCGCATC
TGGCCGTGCGGCACGACACG

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MSDVENQPFFNIQRIYLKDLSLEQPNSPAIFLEQEMPAVEVEVDVKAERLAENVYEIVVAGTVTAKVREKVAFLVEAKQA
GIFDIRNIPAEQIDPLCGIACPTILFPYLRSNIADSITRAGFPPIHLAEINFQALYEQRLAEISQQQQQGGAPNGTTLN

Sequences:

>Translated_159_residues
MSDVENQPFFNIQRIYLKDLSLEQPNSPAIFLEQEMPAVEVEVDVKAERLAENVYEIVVAGTVTAKVREKVAFLVEAKQA
GIFDIRNIPAEQIDPLCGIACPTILFPYLRSNIADSITRAGFPPIHLAEINFQALYEQRLAEISQQQQQGGAPNGTTLN
>Mature_158_residues
SDVENQPFFNIQRIYLKDLSLEQPNSPAIFLEQEMPAVEVEVDVKAERLAENVYEIVVAGTVTAKVREKVAFLVEAKQAG
IFDIRNIPAEQIDPLCGIACPTILFPYLRSNIADSITRAGFPPIHLAEINFQALYEQRLAEISQQQQQGGAPNGTTLN

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=142, Percent_Identity=44.3661971830986, Blast_Score=127, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_BURM7 (A3MQ26)

Other databases:

- EMBL:   CP000548
- RefSeq:   YP_001082362.1
- ProteinModelPortal:   A3MQ26
- SMR:   A3MQ26
- GeneID:   4894605
- GenomeReviews:   CP000548_GR
- KEGG:   bmn:BMA10247_2841
- TIGR:   BMA10247_2841
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- ProtClustDB:   PRK05751
- BioCyc:   BMAL320389:BMA10247_2841-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17671; Mature: 17540

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVENQPFFNIQRIYLKDLSLEQPNSPAIFLEQEMPAVEVEVDVKAERLAENVYEIVVA
CCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHH
GTVTAKVREKVAFLVEAKQAGIFDIRNIPAEQIDPLCGIACPTILFPYLRSNIADSITRA
HHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
GFPPIHLAEINFQALYEQRLAEISQQQQQGGAPNGTTLN
CCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SDVENQPFFNIQRIYLKDLSLEQPNSPAIFLEQEMPAVEVEVDVKAERLAENVYEIVVA
CCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHH
GTVTAKVREKVAFLVEAKQAGIFDIRNIPAEQIDPLCGIACPTILFPYLRSNIADSITRA
HHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
GFPPIHLAEINFQALYEQRLAEISQQQQQGGAPNGTTLN
CCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA