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The map label for this gene is rbsB [C]

Identifier: 126453990

GI number: 126453990

Start: 1635446

End: 1636558

Strand: Reverse

Name: rbsB [C]

Synonym: BURPS1106A_1680

Alternate gene names: 126453990

Gene position: 1636558-1635446 (Counterclockwise)

Preceding gene: 126451502

Following gene: 126455364

Centisome position: 41.03

GC content: 65.41

Gene sequence:

>1113_bases
TTGCTCGTGAACGCGGCCCGACCCGCGTTCGCCCGAAAACGACAGACAGAGAAAGGTGGAGACATGAGACTTTGCACTGG
CAAGGCCGTCCTGCGCGCATGCGTCGCCGCGATCGCCGTCGCGGCGGGCGTGGGCGGCGCGGCCCCGGCAGCCCAGGCGG
CGGGCGCGCGCTTCGCGCTCGTGAGCCACGCGCCCGATTCCGATTCGTGGTGGAACACGATCAAGAACGCGATCAAGCAG
GCGGACGAGGATTTCGATGTCACGACCGATTACCGCAATCCGCCGAACGGCGACATCGCCGACATGGCGCGCCTGATCGA
GCAATCGGCCGCGCGCGACTACGACGGCGTGATCACGACGATCGCCGATTACGACGTGCTGAAGAATTCGCTGAGGAAAG
TCACCGCGAAGAAGATCCCGCTCGTGACGATCAACTCCGGCACCGAAGAACAGAGCGCGCAACTGGGCGCGATCATGCAT
GTCGGCCAGCCCGAGTACGTCGCGGGTCACGCGGCGGGCGAGAAGGCGAAGGCGGCCGGCGTGAAGCGCTTCCTCTGCGT
GAACCACATCGCGACCAACAGCGTGTCGTTCGACCGCTGTCGCGGCTTCGCCGACGCGATCGGCGCCGACTACAAGAGCT
CGACGATCGACTCCGGCCAGGACCCGACCGAGATCCAGTCGAAGGTGAGCGCGTACCTGCGCAACCATCCGAACACGCAG
GCGATCCTCACGCTCGGCCCGGTGCCCGCCGCGGCGTCGCTGAAGGCGGTGCAGCAGATGGGCCTCGCGAACAAGCTGTT
CTTCGCGACGTTCGATTTCTCCGACGACATCGCGAAGGCGATCCAGAGCGGCGCGATCAAGTTCGCGATCGACCAGCAGC
CATACCTGCAGGGCTACATCCCGGTGGCCGTGCTCGCGATCGCGAAGCAGAACAAGACCACCGATCCCGCGAAGATCCGC
CAGATCCTCGAGGCGAACCCGAAATTCCAGGCGCGGCTGTCGACCTACGGGCTGCAGCCGTCGTACGGGCCGAAGAACAT
CCGCTCGGGCCCGGGCTTCATCACGAAGGAGAACCTCGAGAAGGTGATCAAGTACGCGGGCCAGTACCGCTAA

Upstream 100 bases:

>100_bases
GTGCAGCGAGTATAGGCACTGCGCCCACAAAATGGAACAGATTTTCCATCTCACGAACAAATAAAATTTTCTTTGCAATC
GGCGGCGAGTTGACCTAACC

Downstream 100 bases:

>100_bases
CGTCCATCGCAGCGATTCGCACGACGCGCGGGCGCTCGTCCGCGCGCTTTACCGGCGGGCGCAGCCGCACGCGCCGCGCG
CCGGGCATCAAGGAGACATC

Product: carbohydrate ABC transporter periplasmic sugar-binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: ABC-Type Sugar Transport System; Sugar ABC Transporter Periplasmic Component-Like Protein; Twin-Arginine Translocation Pathway Signal; ABC Transporter; Sugar ABC Transporter Periplasmic Protein; Lipoprotein

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MLVNAARPAFARKRQTEKGGDMRLCTGKAVLRACVAAIAVAAGVGGAAPAAQAAGARFALVSHAPDSDSWWNTIKNAIKQ
ADEDFDVTTDYRNPPNGDIADMARLIEQSAARDYDGVITTIADYDVLKNSLRKVTAKKIPLVTINSGTEEQSAQLGAIMH
VGQPEYVAGHAAGEKAKAAGVKRFLCVNHIATNSVSFDRCRGFADAIGADYKSSTIDSGQDPTEIQSKVSAYLRNHPNTQ
AILTLGPVPAAASLKAVQQMGLANKLFFATFDFSDDIAKAIQSGAIKFAIDQQPYLQGYIPVAVLAIAKQNKTTDPAKIR
QILEANPKFQARLSTYGLQPSYGPKNIRSGPGFITKENLEKVIKYAGQYR

Sequences:

>Translated_370_residues
MLVNAARPAFARKRQTEKGGDMRLCTGKAVLRACVAAIAVAAGVGGAAPAAQAAGARFALVSHAPDSDSWWNTIKNAIKQ
ADEDFDVTTDYRNPPNGDIADMARLIEQSAARDYDGVITTIADYDVLKNSLRKVTAKKIPLVTINSGTEEQSAQLGAIMH
VGQPEYVAGHAAGEKAKAAGVKRFLCVNHIATNSVSFDRCRGFADAIGADYKSSTIDSGQDPTEIQSKVSAYLRNHPNTQ
AILTLGPVPAAASLKAVQQMGLANKLFFATFDFSDDIAKAIQSGAIKFAIDQQPYLQGYIPVAVLAIAKQNKTTDPAKIR
QILEANPKFQARLSTYGLQPSYGPKNIRSGPGFITKENLEKVIKYAGQYR
>Mature_370_residues
MLVNAARPAFARKRQTEKGGDMRLCTGKAVLRACVAAIAVAAGVGGAAPAAQAAGARFALVSHAPDSDSWWNTIKNAIKQ
ADEDFDVTTDYRNPPNGDIADMARLIEQSAARDYDGVITTIADYDVLKNSLRKVTAKKIPLVTINSGTEEQSAQLGAIMH
VGQPEYVAGHAAGEKAKAAGVKRFLCVNHIATNSVSFDRCRGFADAIGADYKSSTIDSGQDPTEIQSKVSAYLRNHPNTQ
AILTLGPVPAAASLKAVQQMGLANKLFFATFDFSDDIAKAIQSGAIKFAIDQQPYLQGYIPVAVLAIAKQNKTTDPAKIR
QILEANPKFQARLSTYGLQPSYGPKNIRSGPGFITKENLEKVIKYAGQYR

Specific function: Involved In The High-Affinity D-Ribose Membrane Transport System And Also Serves As The Primary Chemoreceptor For Chemotaxis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39602; Mature: 39602

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVNAARPAFARKRQTEKGGDMRLCTGKAVLRACVAAIAVAAGVGGAAPAAQAAGARFAL
CCCCCCCCHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEEEE
VSHAPDSDSWWNTIKNAIKQADEDFDVTTDYRNPPNGDIADMARLIEQSAARDYDGVITT
EECCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHH
IADYDVLKNSLRKVTAKKIPLVTINSGTEEQSAQLGAIMHVGQPEYVAGHAAGEKAKAAG
HHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHEECCCCCCEECCCCCCHHHHHH
VKRFLCVNHIATNSVSFDRCRGFADAIGADYKSSTIDSGQDPTEIQSKVSAYLRNHPNTQ
HHHHHHHHHHHCCCCCHHHHHCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
AILTLGPVPAAASLKAVQQMGLANKLFFATFDFSDDIAKAIQSGAIKFAIDQQPYLQGYI
EEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCEEEEECCCCHHHHHH
PVAVLAIAKQNKTTDPAKIRQILEANPKFQARLSTYGLQPSYGPKNIRSGPGFITKENLE
HHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
KVIKYAGQYR
HHHHHHCCCC
>Mature Secondary Structure
MLVNAARPAFARKRQTEKGGDMRLCTGKAVLRACVAAIAVAAGVGGAAPAAQAAGARFAL
CCCCCCCCHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEEEE
VSHAPDSDSWWNTIKNAIKQADEDFDVTTDYRNPPNGDIADMARLIEQSAARDYDGVITT
EECCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHH
IADYDVLKNSLRKVTAKKIPLVTINSGTEEQSAQLGAIMHVGQPEYVAGHAAGEKAKAAG
HHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHEECCCCCCEECCCCCCHHHHHH
VKRFLCVNHIATNSVSFDRCRGFADAIGADYKSSTIDSGQDPTEIQSKVSAYLRNHPNTQ
HHHHHHHHHHHCCCCCHHHHHCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
AILTLGPVPAAASLKAVQQMGLANKLFFATFDFSDDIAKAIQSGAIKFAIDQQPYLQGYI
EEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCEEEEECCCCHHHHHH
PVAVLAIAKQNKTTDPAKIRQILEANPKFQARLSTYGLQPSYGPKNIRSGPGFITKENLE
HHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
KVIKYAGQYR
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA