Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 126455364

GI number: 126455364

Start: 1634200

End: 1635345

Strand: Reverse

Name: rbsC [H]

Synonym: BURPS1106A_1679

Alternate gene names: 126455364

Gene position: 1635345-1634200 (Counterclockwise)

Preceding gene: 126453990

Following gene: 126451775

Centisome position: 41.0

GC content: 68.24

Gene sequence:

>1146_bases
ATGGGTGTAGTCGGCAAGCACATGTCAGCGCACGCACACGAGAAGCCGCAGCCGGGCGCGGCGTCCGACGAGCGGCTGCG
CGGCGAGGCGTGGTTCCAGCGCTTCCTCAACCGTCCCGAATTCGCCGCCATTTCCGGCGCCGTGCTCGTGTTCGCGGTGT
TCGCGTTCGGCGCGGGCGGCTCCGGGATGTTCAACCTCGACGGCATCATGAACTGGTCGCAGGTCGCCGCCTATCTCGGC
ATTCTCGCCGTCGGCGCGTGCCTGCTGATGGTCGCGGGCGAGTTCGATTTGTCGATCGGCTCGATGATCGGCTTCGCCGG
GATGATGGTCGCGATCCCCACCGTCTACTTCCATTGGCCGATCTGGCTCGCGGTGCTGTTCGCGTTCGCGGGCTCGATGG
CGCTCGGCGCGCTGAACGGCTATCTCGTGATGCGCACGAAGCTGCCGTCGTTCATCGTCACGCTCGCGTTCCTGTTCATC
CTGCGCGGCCTCACGCTCGCGCTGTCGATCATGTTCGCCGACCGCACCATCGTCTCGGGCCTCGGCGACTACGCGCACGC
CGATCCCGTCGTGCACTTCCTGTTCCAGGGCGTCGCGTTCCACGAGCTGTTCCGCTCGCTCGCGCACGCGGGCGTCGGCC
GGTTGCTCGACAACGGCGAGCCGCTCGTGCCCGGCGTGCCGAAGGTGCTGCTGTGGTGGCTCGCCGTCACCGCGGTCGGC
GCGTTCGTGCTCGCGAAGACGCGCTACGGCAACTGGATCCTCGCCGCGGGCGGCGACGCGCACGCGGCGAAGAACGTCGG
CGTGCCGGTGCGCCGCGTGAAGATCTCGCTGTTCGTGCTGACCGCCTTCTGCGCGTGCCTGTTCGCCGTGCTGCAGGTGG
CCGACATCGGCTCGGCCGCGGCCGACCGCGGGCTGCAAAAGGAATTCGAGGCGATCATCGCCGCGGTGATCGGCGGCACG
CTGCTCACGGGCGGCTACGGCTCGGTGATCGGCGCGGCGTTCGGCGCGCTGATCTTCGGCGTCGTGCAGATCGGCATCAC
CTACACGAACATCAGCTCGGACTGGTTCCGCGTGTTCCTCGGCGTGATGCTGCTCGTCGCCGTGCTGTTCAACCACTACG
TGCGCCGCCGCGTGTCGCAGTCGTAA

Upstream 100 bases:

>100_bases
CGTCCATCGCAGCGATTCGCACGACGCGCGGGCGCTCGTCCGCGCGCTTTACCGGCGGGCGCAGCCGCACGCGCCGCGCG
CCGGGCATCAAGGAGACATC

Downstream 100 bases:

>100_bases
CGGAGTACAAGCATGTCCACGCCAGCATCCCACGATACGATTCTCGCGCTCGAGAACGTCAGCAAGTATTTCGGCAAGGT
GATCGCGCTGTCCGGCGTCA

Product: carbohydrate ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MGVVGKHMSAHAHEKPQPGAASDERLRGEAWFQRFLNRPEFAAISGAVLVFAVFAFGAGGSGMFNLDGIMNWSQVAAYLG
ILAVGACLLMVAGEFDLSIGSMIGFAGMMVAIPTVYFHWPIWLAVLFAFAGSMALGALNGYLVMRTKLPSFIVTLAFLFI
LRGLTLALSIMFADRTIVSGLGDYAHADPVVHFLFQGVAFHELFRSLAHAGVGRLLDNGEPLVPGVPKVLLWWLAVTAVG
AFVLAKTRYGNWILAAGGDAHAAKNVGVPVRRVKISLFVLTAFCACLFAVLQVADIGSAAADRGLQKEFEAIIAAVIGGT
LLTGGYGSVIGAAFGALIFGVVQIGITYTNISSDWFRVFLGVMLLVAVLFNHYVRRRVSQS

Sequences:

>Translated_381_residues
MGVVGKHMSAHAHEKPQPGAASDERLRGEAWFQRFLNRPEFAAISGAVLVFAVFAFGAGGSGMFNLDGIMNWSQVAAYLG
ILAVGACLLMVAGEFDLSIGSMIGFAGMMVAIPTVYFHWPIWLAVLFAFAGSMALGALNGYLVMRTKLPSFIVTLAFLFI
LRGLTLALSIMFADRTIVSGLGDYAHADPVVHFLFQGVAFHELFRSLAHAGVGRLLDNGEPLVPGVPKVLLWWLAVTAVG
AFVLAKTRYGNWILAAGGDAHAAKNVGVPVRRVKISLFVLTAFCACLFAVLQVADIGSAAADRGLQKEFEAIIAAVIGGT
LLTGGYGSVIGAAFGALIFGVVQIGITYTNISSDWFRVFLGVMLLVAVLFNHYVRRRVSQS
>Mature_380_residues
GVVGKHMSAHAHEKPQPGAASDERLRGEAWFQRFLNRPEFAAISGAVLVFAVFAFGAGGSGMFNLDGIMNWSQVAAYLGI
LAVGACLLMVAGEFDLSIGSMIGFAGMMVAIPTVYFHWPIWLAVLFAFAGSMALGALNGYLVMRTKLPSFIVTLAFLFIL
RGLTLALSIMFADRTIVSGLGDYAHADPVVHFLFQGVAFHELFRSLAHAGVGRLLDNGEPLVPGVPKVLLWWLAVTAVGA
FVLAKTRYGNWILAAGGDAHAAKNVGVPVRRVKISLFVLTAFCACLFAVLQVADIGSAAADRGLQKEFEAIIAAVIGGTL
LTGGYGSVIGAAFGALIFGVVQIGITYTNISSDWFRVFLGVMLLVAVLFNHYVRRRVSQS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082395, Length=301, Percent_Identity=32.5581395348837, Blast_Score=121, Evalue=9e-29,
Organism=Escherichia coli, GI1788896, Length=378, Percent_Identity=29.3650793650794, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=30.9677419354839, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI145693152, Length=299, Percent_Identity=29.7658862876254, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1790524, Length=359, Percent_Identity=26.4623955431755, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787794, Length=325, Percent_Identity=29.2307692307692, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789992, Length=138, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693214, Length=273, Percent_Identity=32.6007326007326, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 40575; Mature: 40444

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVVGKHMSAHAHEKPQPGAASDERLRGEAWFQRFLNRPEFAAISGAVLVFAVFAFGAGG
CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
SGMFNLDGIMNWSQVAAYLGILAVGACLLMVAGEFDLSIGSMIGFAGMMVAIPTVYFHWP
CCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IWLAVLFAFAGSMALGALNGYLVMRTKLPSFIVTLAFLFILRGLTLALSIMFADRTIVSG
HHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGDYAHADPVVHFLFQGVAFHELFRSLAHAGVGRLLDNGEPLVPGVPKVLLWWLAVTAVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
AFVLAKTRYGNWILAAGGDAHAAKNVGVPVRRVKISLFVLTAFCACLFAVLQVADIGSAA
HHHHHHCCCCCEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ADRGLQKEFEAIIAAVIGGTLLTGGYGSVIGAAFGALIFGVVQIGITYTNISSDWFRVFL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHH
GVMLLVAVLFNHYVRRRVSQS
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GVVGKHMSAHAHEKPQPGAASDERLRGEAWFQRFLNRPEFAAISGAVLVFAVFAFGAGG
CCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
SGMFNLDGIMNWSQVAAYLGILAVGACLLMVAGEFDLSIGSMIGFAGMMVAIPTVYFHWP
CCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IWLAVLFAFAGSMALGALNGYLVMRTKLPSFIVTLAFLFILRGLTLALSIMFADRTIVSG
HHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGDYAHADPVVHFLFQGVAFHELFRSLAHAGVGRLLDNGEPLVPGVPKVLLWWLAVTAVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
AFVLAKTRYGNWILAAGGDAHAAKNVGVPVRRVKISLFVLTAFCACLFAVLQVADIGSAA
HHHHHHCCCCCEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ADRGLQKEFEAIIAAVIGGTLLTGGYGSVIGAAFGALIFGVVQIGITYTNISSDWFRVFL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHH
GVMLLVAVLFNHYVRRRVSQS
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]