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The map label for this gene is ybfI [H]

Identifier: 126453949

GI number: 126453949

Start: 1969095

End: 1969895

Strand: Reverse

Name: ybfI [H]

Synonym: BURPS1106A_2007

Alternate gene names: 126453949

Gene position: 1969895-1969095 (Counterclockwise)

Preceding gene: 126454659

Following gene: 126453870

Centisome position: 49.39

GC content: 72.16

Gene sequence:

>801_bases
ATGCACCGTGTCACCCATTACCGCCGCGCCGACGACGGCATCGAAGCGATCAGTCTCGATACCGATCGTGCGTTTCCGCG
TCACGCGCATGACGAGTTCGGCGTCGGCGTGATCGTCAGCGGCGCGCATCGTTCGTGGAGCGGATGCGGAACAGTCGATG
CGCGCGCCGGCGACACGATCATGGTCAATCCGGGCGAAGTCCATGACGGCCTGCCGCTCGGCGCGCGCGCGGCGCGCAAC
TGGCGCATGCTCTATCTCACACCCGCGCTCGTGGCGGGCTTCGCCGCCGAAGAAGGATGCGGCGGCGTCGAGCTCGCGCA
TCCGGCCGTCCGCGACGCGCGACTCGCGGCCGCCGTCGAGCGGCTGTTCGCGCGTGTCGTGGCGGGCGCGCAAACGCCTG
CGGCGTCCATCGCGTGCGACGAGGCGCTCGCCCTGCTCGTCGCCGCGCTGCTCGCGCGGCATGCGAGCGGGCGCGCGCCG
CGCGCCGGGAGCGCGCCCGCGATCCGGATCGCGCGCGAGCGGCTCGACGCGTCGCCGGCCGATGCCGTGTCGCTCGCCGA
GCTCGCGAGTCTGGCGGGCGTCAGCCGTTTTCAACTGCTGCGCGGTTTCGCGCGCGAGCTCGGCATCACGCCGCATGCCT
ATCTGATTCAGTCGCGCGCACGCCTCGCCCGTGCGTTGCTTGCGCGCGGCCTGTCGATCGCGCAAGCCGCGGCCGAGGCG
GGTTTCGCCGACCAGAGCCATCTGACGCGCGCGTTCGTTCGCCAGTTCGGCATCACGCCGGGACGCTTCGCGTCACGCTG
A

Upstream 100 bases:

>100_bases
CGCCGCGGGTCGCGCGCCGCAAACCCGGGCGGACCGGACCCGCGCCGCTTCCGGCGCATAATGGCGTCTCGGCCGGCCAG
CGGCCGTTCGAGGAGCGCGC

Downstream 100 bases:

>100_bases
ACGCGTGCTCGCTGCCGCCGCGCGAGCTCGGGCCGTGCGCGTCGCATGTCCGCAATAGTCCGAGATGGTCCTCGCCATCG
CCCGCTCCCCCCGCTTCCCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MHRVTHYRRADDGIEAISLDTDRAFPRHAHDEFGVGVIVSGAHRSWSGCGTVDARAGDTIMVNPGEVHDGLPLGARAARN
WRMLYLTPALVAGFAAEEGCGGVELAHPAVRDARLAAAVERLFARVVAGAQTPAASIACDEALALLVAALLARHASGRAP
RAGSAPAIRIARERLDASPADAVSLAELASLAGVSRFQLLRGFARELGITPHAYLIQSRARLARALLARGLSIAQAAAEA
GFADQSHLTRAFVRQFGITPGRFASR

Sequences:

>Translated_266_residues
MHRVTHYRRADDGIEAISLDTDRAFPRHAHDEFGVGVIVSGAHRSWSGCGTVDARAGDTIMVNPGEVHDGLPLGARAARN
WRMLYLTPALVAGFAAEEGCGGVELAHPAVRDARLAAAVERLFARVVAGAQTPAASIACDEALALLVAALLARHASGRAP
RAGSAPAIRIARERLDASPADAVSLAELASLAGVSRFQLLRGFARELGITPHAYLIQSRARLARALLARGLSIAQAAAEA
GFADQSHLTRAFVRQFGITPGRFASR
>Mature_266_residues
MHRVTHYRRADDGIEAISLDTDRAFPRHAHDEFGVGVIVSGAHRSWSGCGTVDARAGDTIMVNPGEVHDGLPLGARAARN
WRMLYLTPALVAGFAAEEGCGGVELAHPAVRDARLAAAVERLFARVVAGAQTPAASIACDEALALLVAALLARHASGRAP
RAGSAPAIRIARERLDASPADAVSLAELASLAGVSRFQLLRGFARELGITPHAYLIQSRARLARALLARGLSIAQAAAEA
GFADQSHLTRAFVRQFGITPGRFASR

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 28001; Mature: 28001

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRVTHYRRADDGIEAISLDTDRAFPRHAHDEFGVGVIVSGAHRSWSGCGTVDARAGDTI
CCCCCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEE
MVNPGEVHDGLPLGARAARNWRMLYLTPALVAGFAAEEGCGGVELAHPAVRDARLAAAVE
EECCCCCCCCCCCCCHHHCCCEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
RLFARVVAGAQTPAASIACDEALALLVAALLARHASGRAPRAGSAPAIRIARERLDASPA
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCC
DAVSLAELASLAGVSRFQLLRGFARELGITPHAYLIQSRARLARALLARGLSIAQAAAEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
GFADQSHLTRAFVRQFGITPGRFASR
CCCCHHHHHHHHHHHHCCCCCHHCCC
>Mature Secondary Structure
MHRVTHYRRADDGIEAISLDTDRAFPRHAHDEFGVGVIVSGAHRSWSGCGTVDARAGDTI
CCCCCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEE
MVNPGEVHDGLPLGARAARNWRMLYLTPALVAGFAAEEGCGGVELAHPAVRDARLAAAVE
EECCCCCCCCCCCCCHHHCCCEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
RLFARVVAGAQTPAASIACDEALALLVAALLARHASGRAPRAGSAPAIRIARERLDASPA
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCC
DAVSLAELASLAGVSRFQLLRGFARELGITPHAYLIQSRARLARALLARGLSIAQAAAEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
GFADQSHLTRAFVRQFGITPGRFASR
CCCCHHHHHHHHHHHHCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]