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The map label for this gene is ugpB [H]

Identifier: 126453942

GI number: 126453942

Start: 3666536

End: 3667861

Strand: Reverse

Name: ugpB [H]

Synonym: BURPS1106A_3755

Alternate gene names: 126453942

Gene position: 3667861-3666536 (Counterclockwise)

Preceding gene: 126452532

Following gene: 126455200

Centisome position: 91.96

GC content: 65.84

Gene sequence:

>1326_bases
ATGAAATACAAGATGCTGGTTCGTTCGCTCGCGTTCGGGGGCGCGCTTTGGTTCGGCGCGCAGCAGGCGGCGTGCGCTGC
CACCGAGATCCAGTTCTGGCATGCGATGGAGGCGGCGCTCGGCGAGCGCGTGAACGAGATCGCCGCGCAGTTCAATGCGT
CGCAAAGCGACTACAAGATCGTGCCGGTCTTCAAAGGCACCTACGATCAGGCGCTTGCGGCGGGCATCGCCGCGTACCGC
AGCGGCAACGCGCCGGCGATCCTGCAGGTGTACGAAGTGGGCACGGCGACGATGATGCAGGCGAAGAAGGCGGTGCTGCC
CGTATCCGACGTATTCCGCCAGGCGGGCGTGCCGCTCGACGAGAAGGCGTTCGTGCCGACGATCGCGAGCTACTACAGCG
ATGCGAGGACGGGCCGCCTCGTATCGATGCCGTTCAACAGCTCGACGCCCGTGCTGTACTACAACAAGGACGCGTTCAGG
AAGGCGGGGCTCGATCCGAACCAGCCGCCGAAGACGTGGGCCGACGTGAAGGCCGACGCGGAAAAGCTGAAGAAGGCGGG
CTACGCGTGCGGCTACACGACGGGCTGGCAGGGCTGGATCCAGCTCGAGAACTACAGCGCGTGGCATGGCCTGCCGTTCG
CGACGCGCAACAACGGCTTCGACGGCGCCGATGCGACGCTCGAGTTCAACAAGCCGCAGCAGATCGCGCACATCCAGTTC
CTGCAGGTCATGGCGAAGGACGGCACGTTTACGTACGTCGGCCGCAAGGACGAGGCGAGCGCGAAGTTCTACAGCGGCGA
TTGCGCGATCATGACGACGTCGTCGGGCGCGCTCGCGACGATCCACAAGTACGCGAAGTTCGATTTCGGCACCGGAATGA
TGCCGTACGATGCGGGCGTGAAGGGTGCGCCGCAGAACGCGATCATCGGCGGCGCGAGCCTGTGGGTGCTCGCGGGCAAG
GATCCGGCCACGTACAAGGGCGTCGCGAAGTTCCTCGCCTATCTGAGCTCGCCCGCCGTCGCCGCGAAGTGGCACGAGGA
CACGGGCTATCTGCCGGTGACGACGGCCGCATACGATCTCGCGCGCGAGCAGGGCTTCTATGCGAAGCACCCGGGCGCGG
ACACGGCGATCAAGCAGATGATGAACAAACCGCCGCTGCCGTACACGAAGGGGCTGCGGCTCGGCAACATGCCGCAGATC
CGCACGATCGTCGACGAGGAGCTCGAGCAGGTGTGGGCGCAGAAGAAGACGCCGAAGGCGGCGCTCGATTCCGCCGCCGC
GCGCGGCGACGAACTGCTGCGCCGCTTCGAGAAATCGGGCGGCTGA

Upstream 100 bases:

>100_bases
CATGGACGAAAACTAAACTGTCCGGCTCGCCGCATCCGGCACGGATGCCGTGACGGTGCGGCGCGCGTTGCCCGGACCGA
GGAGAAAAGGAGAGAGGTCG

Downstream 100 bases:

>100_bases
GCCCGCGCCGCCGGCGTGCGGCTCGGCCGGCGCGGCCTTTTCGCGCATGCGGTTGCGCGAGCAAACGGGCTGCGCGGCCC
GCCGCGCCCGGCGGCATTCG

Product: glycerol-3-phosphate transporter periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MKYKMLVRSLAFGGALWFGAQQAACAATEIQFWHAMEAALGERVNEIAAQFNASQSDYKIVPVFKGTYDQALAAGIAAYR
SGNAPAILQVYEVGTATMMQAKKAVLPVSDVFRQAGVPLDEKAFVPTIASYYSDARTGRLVSMPFNSSTPVLYYNKDAFR
KAGLDPNQPPKTWADVKADAEKLKKAGYACGYTTGWQGWIQLENYSAWHGLPFATRNNGFDGADATLEFNKPQQIAHIQF
LQVMAKDGTFTYVGRKDEASAKFYSGDCAIMTTSSGALATIHKYAKFDFGTGMMPYDAGVKGAPQNAIIGGASLWVLAGK
DPATYKGVAKFLAYLSSPAVAAKWHEDTGYLPVTTAAYDLAREQGFYAKHPGADTAIKQMMNKPPLPYTKGLRLGNMPQI
RTIVDEELEQVWAQKKTPKAALDSAAARGDELLRRFEKSGG

Sequences:

>Translated_441_residues
MKYKMLVRSLAFGGALWFGAQQAACAATEIQFWHAMEAALGERVNEIAAQFNASQSDYKIVPVFKGTYDQALAAGIAAYR
SGNAPAILQVYEVGTATMMQAKKAVLPVSDVFRQAGVPLDEKAFVPTIASYYSDARTGRLVSMPFNSSTPVLYYNKDAFR
KAGLDPNQPPKTWADVKADAEKLKKAGYACGYTTGWQGWIQLENYSAWHGLPFATRNNGFDGADATLEFNKPQQIAHIQF
LQVMAKDGTFTYVGRKDEASAKFYSGDCAIMTTSSGALATIHKYAKFDFGTGMMPYDAGVKGAPQNAIIGGASLWVLAGK
DPATYKGVAKFLAYLSSPAVAAKWHEDTGYLPVTTAAYDLAREQGFYAKHPGADTAIKQMMNKPPLPYTKGLRLGNMPQI
RTIVDEELEQVWAQKKTPKAALDSAAARGDELLRRFEKSGG
>Mature_441_residues
MKYKMLVRSLAFGGALWFGAQQAACAATEIQFWHAMEAALGERVNEIAAQFNASQSDYKIVPVFKGTYDQALAAGIAAYR
SGNAPAILQVYEVGTATMMQAKKAVLPVSDVFRQAGVPLDEKAFVPTIASYYSDARTGRLVSMPFNSSTPVLYYNKDAFR
KAGLDPNQPPKTWADVKADAEKLKKAGYACGYTTGWQGWIQLENYSAWHGLPFATRNNGFDGADATLEFNKPQQIAHIQF
LQVMAKDGTFTYVGRKDEASAKFYSGDCAIMTTSSGALATIHKYAKFDFGTGMMPYDAGVKGAPQNAIIGGASLWVLAGK
DPATYKGVAKFLAYLSSPAVAAKWHEDTGYLPVTTAAYDLAREQGFYAKHPGADTAIKQMMNKPPLPYTKGLRLGNMPQI
RTIVDEELEQVWAQKKTPKAALDSAAARGDELLRRFEKSGG

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=416, Percent_Identity=69.4711538461538, Blast_Score=629, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47944; Mature: 47944

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKMLVRSLAFGGALWFGAQQAACAATEIQFWHAMEAALGERVNEIAAQFNASQSDYKI
CCHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
VPVFKGTYDQALAAGIAAYRSGNAPAILQVYEVGTATMMQAKKAVLPVSDVFRQAGVPLD
EEEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCHHHHHHHCCCCCC
EKAFVPTIASYYSDARTGRLVSMPFNSSTPVLYYNKDAFRKAGLDPNQPPKTWADVKADA
CCCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCHHHHHCCCCCCCCCCCHHHHHHHH
EKLKKAGYACGYTTGWQGWIQLENYSAWHGLPFATRNNGFDGADATLEFNKPQQIAHIQF
HHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHH
LQVMAKDGTFTYVGRKDEASAKFYSGDCAIMTTSSGALATIHKYAKFDFGTGMMPYDAGV
HHHHHCCCCEEEECCCCCCCCEEECCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCC
KGAPQNAIIGGASLWVLAGKDPATYKGVAKFLAYLSSPAVAAKWHEDTGYLPVTTAAYDL
CCCCCCCEECCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEHHHHHHH
AREQGFYAKHPGADTAIKQMMNKPPLPYTKGLRLGNMPQIRTIVDEELEQVWAQKKTPKA
HHHCCCCCCCCCHHHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHH
ALDSAAARGDELLRRFEKSGG
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKYKMLVRSLAFGGALWFGAQQAACAATEIQFWHAMEAALGERVNEIAAQFNASQSDYKI
CCHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
VPVFKGTYDQALAAGIAAYRSGNAPAILQVYEVGTATMMQAKKAVLPVSDVFRQAGVPLD
EEEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCHHHHHHHCCCCCC
EKAFVPTIASYYSDARTGRLVSMPFNSSTPVLYYNKDAFRKAGLDPNQPPKTWADVKADA
CCCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCHHHHHCCCCCCCCCCCHHHHHHHH
EKLKKAGYACGYTTGWQGWIQLENYSAWHGLPFATRNNGFDGADATLEFNKPQQIAHIQF
HHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHH
LQVMAKDGTFTYVGRKDEASAKFYSGDCAIMTTSSGALATIHKYAKFDFGTGMMPYDAGV
HHHHHCCCCEEEECCCCCCCCEEECCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCC
KGAPQNAIIGGASLWVLAGKDPATYKGVAKFLAYLSSPAVAAKWHEDTGYLPVTTAAYDL
CCCCCCCEECCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEHHHHHHH
AREQGFYAKHPGADTAIKQMMNKPPLPYTKGLRLGNMPQIRTIVDEELEQVWAQKKTPKA
HHHCCCCCCCCCHHHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHH
ALDSAAARGDELLRRFEKSGG
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA