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The map label for this gene is yfjD [H]

Identifier: 126453893

GI number: 126453893

Start: 3432429

End: 3433724

Strand: Direct

Name: yfjD [H]

Synonym: BURPS1106A_3530

Alternate gene names: 126453893

Gene position: 3432429-3433724 (Clockwise)

Preceding gene: 126451455

Following gene: 126452463

Centisome position: 86.06

GC content: 63.19

Gene sequence:

>1296_bases
GTGGACCAAATTCCCTTATGGGCGCAAATCGGCGCCGTCTTTCTGCTTCTTCTTTGCTCCAGCTTCTTCTCCATTTCTGA
AACCGCGATGATGGCGCTCAACCGCCATCGGCTCAAACATCTCGCGAGCCACGGCGCGCTCGGCGCAAAGACGACTCAAC
GCCTCCTCGCGCGAACCGATCAGTTGCTGAGCGTGATCCTGATCGGCAACAACCTGTTCAACACGATCATCCCGGTGCTG
ACGACGTCGATCGCACTGCGCACGTTCGGCCACGACAACTTCGTGCTGTCGATCGCGACCGGCATCGTCGCGTTCCTCAT
CATCGTGTTCGCCGAGATCACCCCGAAGATCGTCGGCGCGACGTTCCCGGAGCGGATCGCGTTACCGGCGAGCGTCGTGA
TCGCGCCGCTGATGCGCGTGATGATGCCCGTCGTGTGGTTCGTCAATACGCTGTCCGGAGCGATCCTCGCCGCGCTGCGG
ATCAACACGAAGGCGGGGCGCGACCAGCGGCTGTCGACCGAGGAGCTGCGCTCGCTCGTGCTCGAATCGGGCAGCTTCAT
GCCGACCAAGCATCGCAGCATCCTGCTCAACCTGTTCGATCTCGAGAACATCACCGTCGACGACGTGATGATTCCGCGCC
GACAGATCGAGTCGCTCAACATCCTCGCACCGCTCGACGACGTGCTGCATCAGCTCGAGACCTGCTATCACAACCGGCTC
GTCGTCTACGAGGGCGACATCGATCGCGTGCTCGGCGTGCTGCACGTGCGCAAGACGCTCGCCGCGTTCCACAATCAGGA
TTTCGACCGCGGGACGCTGCGCGAGCTGCTCGCGCAGCCGTACTACGTGCCATCCGGCACGCCGGTGTTCCAACAGTTGC
AATACTTCCAGGAGAGCCGGCACCGCACGGCGCTCGTCGTCAACGAGTACGGCGAGCTGGAGGGGCTCGTCACGCCGGAA
GACATCATCGAGGAGCTGATCGGCGAATTCACGACGACGATGCCGCGCAGCGAAAACTCGAAAAGCGGCTGGGACGCGAA
CGGCGAATGCATCGTGGCGGCCAGCATGCCGCTGCGCGAGCTGAATCGCTGGCTGCATCTCGGCCTGCCGACCAACGGGC
CCAAGACGCTCAACGGTCTGATCCTCGAAGAGCTCGAGGAAATTCCCGAGGACGATGTCTGCCTGAAGATCGGCGACGTG
ATGATCGAAGTGATGCGCACCGAAGATCAGGGGGTGCGCACGGTCAAGCTCTTCAAGCCGCGCGCACCGCGCGGCGGGCG
CGCGGCCGGCGCGTGA

Upstream 100 bases:

>100_bases
CGGCACCGGGCGGTACGGCCGATGCGGCGGCATACGCGAACCGGCCGCGCCCCTCTGCTATAGTCTTCTCCATTCCTGTC
ATTCACGACCCCTGCGACGC

Downstream 100 bases:

>100_bases
CGGCCGGCGCGGTTGGCCGTTCGGCCGACTGTCGGCCGTCCGCACGACGCGCGATGATCGTTTCATCGTGTCGAGCAGGC
GGCCGCGAGGCCGGTTCCGA

Product: putative transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MDQIPLWAQIGAVFLLLLCSSFFSISETAMMALNRHRLKHLASHGALGAKTTQRLLARTDQLLSVILIGNNLFNTIIPVL
TTSIALRTFGHDNFVLSIATGIVAFLIIVFAEITPKIVGATFPERIALPASVVIAPLMRVMMPVVWFVNTLSGAILAALR
INTKAGRDQRLSTEELRSLVLESGSFMPTKHRSILLNLFDLENITVDDVMIPRRQIESLNILAPLDDVLHQLETCYHNRL
VVYEGDIDRVLGVLHVRKTLAAFHNQDFDRGTLRELLAQPYYVPSGTPVFQQLQYFQESRHRTALVVNEYGELEGLVTPE
DIIEELIGEFTTTMPRSENSKSGWDANGECIVAASMPLRELNRWLHLGLPTNGPKTLNGLILEELEEIPEDDVCLKIGDV
MIEVMRTEDQGVRTVKLFKPRAPRGGRAAGA

Sequences:

>Translated_431_residues
MDQIPLWAQIGAVFLLLLCSSFFSISETAMMALNRHRLKHLASHGALGAKTTQRLLARTDQLLSVILIGNNLFNTIIPVL
TTSIALRTFGHDNFVLSIATGIVAFLIIVFAEITPKIVGATFPERIALPASVVIAPLMRVMMPVVWFVNTLSGAILAALR
INTKAGRDQRLSTEELRSLVLESGSFMPTKHRSILLNLFDLENITVDDVMIPRRQIESLNILAPLDDVLHQLETCYHNRL
VVYEGDIDRVLGVLHVRKTLAAFHNQDFDRGTLRELLAQPYYVPSGTPVFQQLQYFQESRHRTALVVNEYGELEGLVTPE
DIIEELIGEFTTTMPRSENSKSGWDANGECIVAASMPLRELNRWLHLGLPTNGPKTLNGLILEELEEIPEDDVCLKIGDV
MIEVMRTEDQGVRTVKLFKPRAPRGGRAAGA
>Mature_431_residues
MDQIPLWAQIGAVFLLLLCSSFFSISETAMMALNRHRLKHLASHGALGAKTTQRLLARTDQLLSVILIGNNLFNTIIPVL
TTSIALRTFGHDNFVLSIATGIVAFLIIVFAEITPKIVGATFPERIALPASVVIAPLMRVMMPVVWFVNTLSGAILAALR
INTKAGRDQRLSTEELRSLVLESGSFMPTKHRSILLNLFDLENITVDDVMIPRRQIESLNILAPLDDVLHQLETCYHNRL
VVYEGDIDRVLGVLHVRKTLAAFHNQDFDRGTLRELLAQPYYVPSGTPVFQQLQYFQESRHRTALVVNEYGELEGLVTPE
DIIEELIGEFTTTMPRSENSKSGWDANGECIVAASMPLRELNRWLHLGLPTNGPKTLNGLILEELEEIPEDDVCLKIGDV
MIEVMRTEDQGVRTVKLFKPRAPRGGRAAGA

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=347, Percent_Identity=25.0720461095101, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI40068055, Length=344, Percent_Identity=26.453488372093, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI40068053, Length=344, Percent_Identity=26.453488372093, Blast_Score=76, Evalue=5e-14,
Organism=Escherichia coli, GI145693175, Length=404, Percent_Identity=38.6138613861386, Blast_Score=310, Evalue=1e-85,
Organism=Escherichia coli, GI87082033, Length=280, Percent_Identity=29.6428571428571, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1790664, Length=428, Percent_Identity=23.5981308411215, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1786879, Length=218, Percent_Identity=27.0642201834862, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788119, Length=241, Percent_Identity=23.6514522821577, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47990; Mature: 47990

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQIPLWAQIGAVFLLLLCSSFFSISETAMMALNRHRLKHLASHGALGAKTTQRLLARTD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QLLSVILIGNNLFNTIIPVLTTSIALRTFGHDNFVLSIATGIVAFLIIVFAEITPKIVGA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
TFPERIALPASVVIAPLMRVMMPVVWFVNTLSGAILAALRINTKAGRDQRLSTEELRSLV
CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
LESGSFMPTKHRSILLNLFDLENITVDDVMIPRRQIESLNILAPLDDVLHQLETCYHNRL
HHCCCCCCCCCHHHHHHHHHCCCCEEHHHHCCHHHHHHCCEECCHHHHHHHHHHHHHCCE
VVYEGDIDRVLGVLHVRKTLAAFHNQDFDRGTLRELLAQPYYVPSGTPVFQQLQYFQESR
EEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEECCCCCHHHHHHHHHHHCC
HRTALVVNEYGELEGLVTPEDIIEELIGEFTTTMPRSENSKSGWDANGECIVAASMPLRE
CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHH
LNRWLHLGLPTNGPKTLNGLILEELEEIPEDDVCLKIGDVMIEVMRTEDQGVRTVKLFKP
HHHHEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECC
RAPRGGRAAGA
CCCCCCCCCCC
>Mature Secondary Structure
MDQIPLWAQIGAVFLLLLCSSFFSISETAMMALNRHRLKHLASHGALGAKTTQRLLARTD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QLLSVILIGNNLFNTIIPVLTTSIALRTFGHDNFVLSIATGIVAFLIIVFAEITPKIVGA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
TFPERIALPASVVIAPLMRVMMPVVWFVNTLSGAILAALRINTKAGRDQRLSTEELRSLV
CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
LESGSFMPTKHRSILLNLFDLENITVDDVMIPRRQIESLNILAPLDDVLHQLETCYHNRL
HHCCCCCCCCCHHHHHHHHHCCCCEEHHHHCCHHHHHHCCEECCHHHHHHHHHHHHHCCE
VVYEGDIDRVLGVLHVRKTLAAFHNQDFDRGTLRELLAQPYYVPSGTPVFQQLQYFQESR
EEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEECCCCCHHHHHHHHHHHCC
HRTALVVNEYGELEGLVTPEDIIEELIGEFTTTMPRSENSKSGWDANGECIVAASMPLRE
CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHH
LNRWLHLGLPTNGPKTLNGLILEELEEIPEDDVCLKIGDVMIEVMRTEDQGVRTVKLFKP
HHHHEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECC
RAPRGGRAAGA
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]