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The map label for this gene is hfq [H]

Identifier: 126453854

GI number: 126453854

Start: 1761220

End: 1761870

Strand: Reverse

Name: hfq [H]

Synonym: BURPS1106A_1799

Alternate gene names: 126453854

Gene position: 1761870-1761220 (Counterclockwise)

Preceding gene: 126451524

Following gene: 126453964

Centisome position: 44.17

GC content: 70.97

Gene sequence:

>651_bases
ATGGCCAATCCTGCAGAATCCCATCCGCAAAACGACTTCATCAATGCCGCGCGCAAGGAACGCAAGCGCGTCGAAATTTA
TCTCGTCAACGGTATTCGACTGACGGGTTGCATCGAGTCGTTCGACCAGTATCTGGTGATGCTGCGCACGCCCGTCGGCC
TGCAAGGCATCTATAAACGCGCCATCTCGACGATCCAGCTCGACACGGGCGGCTCCCGTCCGGGCGGACGCGGCCCGCGC
GCGGGCGGCGCCCACGGCGGCGGCGGACGCCCCGGCGGACGCGAAGGCGGCGGTCATGGCCCGTACGGCTCGCACGGCGG
CTCGCGCGAACCCCGCGGCGACGGCGGCGGCTATGGCGCTCGCGAACCGCGTGGCGACGGCGGTTATGGCTCCCGCGAAT
CGCGCGGCGACGGCGGCTACGGCTCCCGCGAACCGCGTGGCGACGGCGGCTACGGTTCCCGCGAACCGCGTGGCGACGGC
GGCTATGGCGCGCGCGAGCCGCGTGAACCGCGCGAGCCCCGCGAGTCTTACGGCGCGCCGCAAGAAGGCGCATCGACGCC
GTCCGGCACGCAGGAACGCAACGGCAACGGCAACGGCCCGGTGATCGTCACGCGCCGTCGCCGTTCGCTCGGCCCGACCG
ACGGCCAATAA

Upstream 100 bases:

>100_bases
CATCGGGTTCGAACAGGGTAAAATCCCGCCAAACGCTGTGTAAGTTCGCATGCGGCGAAACGCATAACTCTTAATTGACG
CCGGCACCTGCCGCTTTTTA

Downstream 100 bases:

>100_bases
AGGCGGGCCGCCAAATCGAAAGGGCAAGCCGCGACCGGCTTGCCCTTTTTTCTTGCCTGAGCGCGCAGCGCAGCGCCATC
GCGAATCCCGGAGCCGCGCA

Product: putative RNA chaperone Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKRAISTIQLDTGGSRPGGRGPR
AGGAHGGGGRPGGREGGGHGPYGSHGGSREPRGDGGGYGAREPRGDGGYGSRESRGDGGYGSREPRGDGGYGSREPRGDG
GYGAREPREPREPRESYGAPQEGASTPSGTQERNGNGNGPVIVTRRRRSLGPTDGQ

Sequences:

>Translated_216_residues
MANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKRAISTIQLDTGGSRPGGRGPR
AGGAHGGGGRPGGREGGGHGPYGSHGGSREPRGDGGGYGAREPRGDGGYGSRESRGDGGYGSREPRGDGGYGSREPRGDG
GYGAREPREPREPRESYGAPQEGASTPSGTQERNGNGNGPVIVTRRRRSLGPTDGQ
>Mature_215_residues
ANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKRAISTIQLDTGGSRPGGRGPRA
GGAHGGGGRPGGREGGGHGPYGSHGGSREPRGDGGGYGAREPRGDGGYGSRESRGDGGYGSREPRGDGGYGSREPRGDGG
YGAREPREPREPRESYGAPQEGASTPSGTQERNGNGNGPVIVTRRRRSLGPTDGQ

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=56, Percent_Identity=57.1428571428571, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 22600; Mature: 22469

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
CCCCCCCCCCHHHHHHHHHHCCEEEEEEECCEEHHHHHHHHHHHHHHHHCCCCHHHHHHH
AISTIQLDTGGSRPGGRGPRAGGAHGGGGRPGGREGGGHGPYGSHGGSREPRGDGGGYGA
HHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
REPRGDGGYGSRESRGDGGYGSREPRGDGGYGSREPRGDGGYGAREPREPREPRESYGAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
QEGASTPSGTQERNGNGNGPVIVTRRRRSLGPTDGQ
CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure 
ANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
CCCCCCCCCHHHHHHHHHHCCEEEEEEECCEEHHHHHHHHHHHHHHHHCCCCHHHHHHH
AISTIQLDTGGSRPGGRGPRAGGAHGGGGRPGGREGGGHGPYGSHGGSREPRGDGGGYGA
HHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
REPRGDGGYGSRESRGDGGYGSREPRGDGGYGSREPRGDGGYGAREPREPREPRESYGAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
QEGASTPSGTQERNGNGNGPVIVTRRRRSLGPTDGQ
CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA