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The map label for this gene is yafC [C]

Identifier: 126453831

GI number: 126453831

Start: 327906

End: 328994

Strand: Direct

Name: yafC [C]

Synonym: BURPS1106A_0356

Alternate gene names: 126453831

Gene position: 327906-328994 (Clockwise)

Preceding gene: 126452502

Following gene: 126451505

Centisome position: 8.22

GC content: 67.31

Gene sequence:

>1089_bases
ATGCACGAAAAAGTGAGCGGCGTCACATTCGGGGGCGCCGTTTTGCCTTTTTTGACGTTTTCAATTCACCAGCTTTGTTA
CAGTTGCTTGCGATTGCATAATTCCCCTCGATTGCGAGCATTTCGGATGGATACCCTCGTCAGCATGAATGTGTTCCGCT
ATGTCGTCGAAGTCGGCAGCTTCGTCGGCGCGGCCGAGCGCATGGAGATGTCGGCGGCGATGGCGAGCAAGCACGTGATG
CATCTCGAGCACCAGCTCGGCGCGCGTCTCCTGCATCGCACGACGCGCCGCGTCGCGCCGACGGAGGCGGGGCGCGAATA
CTACGAGCGGCTCGTGCAGGCGCTCACCGAACTCGACGAGGCCGGGCAGGCGGTGGGCGCCGCGAGCGTCGTGCCGCAGG
GGCGGCTGCGCGTGACGTCGCTGTCCGCGTTCGGGCTGCGCCACGTGATGGACGCGGTGACGTCGTACGCCGAGCGCTAC
GCCGACGTGACGGTCGAGATCACGTTGTCCGATCGTGTCGTCGAGCTGATCGACGAAGGCTACGACGTCGCGGTGCGCGC
CGCGCCCGCCGGCATGAAATCGTCGTCGCTCGTCGCGCGGCAGATCGCGACCGCGCACATCCTGCTCGTCGCGTCGCCCG
ACTATCTCGCGAAGCACGGCACGCCGGCGACGATCGCCGATCTCCAGCATCACAGCTTCATTCGCCGCGAGCCGAACGAG
ACGCTGCTAGACGCGGCGATCTCCGAGGTCGCGGCCGCCTCGCGCGTGCCGATGTCGGGCAACGTGATCGTCAACCATCT
CGAAGGGCTGCGCGTCGCGGTGCTGGGCGGCGCGGGCATCGCGCTGCTCGGCACCGAAGTGGTCGGCGAGGACATCGAGT
CCGGCCGCCTCGTGCCGCTGCTGCTCGATGCGCTGCCGCCGCGCGAGCTGCCGATCTACGCGGTGTACGCGAGCCGGCGG
CACGTATCGGCGAAGGTGCGCTCGTTCGTCGATTTCCTTGCCGATCGCTTCGCCGGCCAGTCGCTGTGCCCGTCGATCGA
CGAGCGGCTGCGGCAGCTCGCGATGCCGCGGATGAAGCGGCTCGGGTGA

Upstream 100 bases:

>100_bases
GAACGACCGCTATTCGGGCATGTCGGGCGGCGACACGTTCGGCGCGGGAATTCGTGCGAAGTTCTAACGAATTGGCGCCC
GGGCGCGCACCGCCCGGGCG

Downstream 100 bases:

>100_bases
CGCGCGCGCACGGCATGCGCGCCGCGTAGCGACGAAAAAAGACGAAAAAAGACGAAAAAAAGCGGACCGGACGGTCCGCT
TCAAGCTGAGGACGAACCCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MHEKVSGVTFGGAVLPFLTFSIHQLCYSCLRLHNSPRLRAFRMDTLVSMNVFRYVVEVGSFVGAAERMEMSAAMASKHVM
HLEHQLGARLLHRTTRRVAPTEAGREYYERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERY
ADVTVEITLSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKHGTPATIADLQHHSFIRREPNE
TLLDAAISEVAAASRVPMSGNVIVNHLEGLRVAVLGGAGIALLGTEVVGEDIESGRLVPLLLDALPPRELPIYAVYASRR
HVSAKVRSFVDFLADRFAGQSLCPSIDERLRQLAMPRMKRLG

Sequences:

>Translated_362_residues
MHEKVSGVTFGGAVLPFLTFSIHQLCYSCLRLHNSPRLRAFRMDTLVSMNVFRYVVEVGSFVGAAERMEMSAAMASKHVM
HLEHQLGARLLHRTTRRVAPTEAGREYYERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERY
ADVTVEITLSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKHGTPATIADLQHHSFIRREPNE
TLLDAAISEVAAASRVPMSGNVIVNHLEGLRVAVLGGAGIALLGTEVVGEDIESGRLVPLLLDALPPRELPIYAVYASRR
HVSAKVRSFVDFLADRFAGQSLCPSIDERLRQLAMPRMKRLG
>Mature_362_residues
MHEKVSGVTFGGAVLPFLTFSIHQLCYSCLRLHNSPRLRAFRMDTLVSMNVFRYVVEVGSFVGAAERMEMSAAMASKHVM
HLEHQLGARLLHRTTRRVAPTEAGREYYERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERY
ADVTVEITLSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKHGTPATIADLQHHSFIRREPNE
TLLDAAISEVAAASRVPMSGNVIVNHLEGLRVAVLGGAGIALLGTEVVGEDIESGRLVPLLLDALPPRELPIYAVYASRR
HVSAKVRSFVDFLADRFAGQSLCPSIDERLRQLAMPRMKRLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=33.3333333333333, Blast_Score=164, Evalue=9e-42,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=34.0136054421769, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=30.5369127516779, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=28.5714285714286, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787128, Length=303, Percent_Identity=29.042904290429, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=28.4722222222222, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787589, Length=301, Percent_Identity=27.5747508305648, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789173, Length=273, Percent_Identity=26.3736263736264, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788706, Length=291, Percent_Identity=23.7113402061856, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788481, Length=298, Percent_Identity=24.1610738255034, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 39499; Mature: 39499

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEKVSGVTFGGAVLPFLTFSIHQLCYSCLRLHNSPRLRAFRMDTLVSMNVFRYVVEVGS
CCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHH
FVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREYYERLVQALTELDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
AGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERYADVTVEITLSDRVVELIDEG
HHHHHCHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHCC
YDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKHGTPATIADLQHHSFIRREPNE
CCEEEEECCCCCCHHHHHHHHHHHHEEEEEECCHHHHHCCCCHHHHHHHHHHHHHCCCCH
TLLDAAISEVAAASRVPMSGNVIVNHLEGLRVAVLGGAGIALLGTEVVGEDIESGRLVPL
HHHHHHHHHHHHHHCCCCCCCHHEEHHCCCEEEEECCCCCEEHHHHHHHCCCCCCCCHHH
LLDALPPRELPIYAVYASRRHVSAKVRSFVDFLADRFAGQSLCPSIDERLRQLAMPRMKR
HHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LG
CC
>Mature Secondary Structure
MHEKVSGVTFGGAVLPFLTFSIHQLCYSCLRLHNSPRLRAFRMDTLVSMNVFRYVVEVGS
CCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHH
FVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREYYERLVQALTELDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
AGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERYADVTVEITLSDRVVELIDEG
HHHHHCHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHCC
YDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKHGTPATIADLQHHSFIRREPNE
CCEEEEECCCCCCHHHHHHHHHHHHEEEEEECCHHHHHCCCCHHHHHHHHHHHHHCCCCH
TLLDAAISEVAAASRVPMSGNVIVNHLEGLRVAVLGGAGIALLGTEVVGEDIESGRLVPL
HHHHHHHHHHHHHHCCCCCCCHHEEHHCCCEEEEECCCCCEEHHHHHHHCCCCCCCCHHH
LLDALPPRELPIYAVYASRRHVSAKVRSFVDFLADRFAGQSLCPSIDERLRQLAMPRMKR
HHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]