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The map label for this gene is phnF [C]

Identifier: 126453625

GI number: 126453625

Start: 3268644

End: 3269420

Strand: Direct

Name: phnF [C]

Synonym: BURPS1106A_3347

Alternate gene names: 126453625

Gene position: 3268644-3269420 (Clockwise)

Preceding gene: 126454190

Following gene: 126455406

Centisome position: 81.95

GC content: 69.76

Gene sequence:

>777_bases
ATGACATCTGTCGACCACCTCTTGCAGGACTCGCCGCTCGAGCGCGGCAGCGGCGTCTCGGTGTGGCGGCAGATCGAGCA
GATCCTTGCCGCCGAGATCGCCGCGAACGGCTTCGGCGAGGACGGCCGGCTGCCGAGCGAAGGCGAGCTCGCCAAGCGCT
TCGACGTCAACCGCCATACGGTGCGCCGCGCGATGCTCGGGCTCGCCGCGTCGGGCCTCGTGAGCGTCGAGCAAGGCCGC
GGCACGTTCGTGCAGTCCGGCGCGATCGACTACACGATCGGCCGCCGCACGCGCTTCACCGAAAACCTGAATCGCCATAA
CCACGCGGCGGTCGGCAAGATGCTGTCCGCCGCGCGCGTGAAAGCCGATCCGGCGACCGCGAAGGCGCTCGGCCTGCGCG
CGGGCGCGTACGTGTACCGGATCGAATCGATCCACGAGGCGGACGGCGTGCCGCTCACTTACGCGCGCAGCGCCTATCCG
GCCGCGCGCTTCGCCGAGCTGCCGGCCGCGCTCGAGCGCACCGAGCGCGTCACCGACGCGCTCGCCGAATACGGCGTGGC
CGACTACCTGCGCAAATGGAGCCGCATCGGCAGCGTGCTGCCGGAGGCCGCGATCGCGCGCCGGCTCGGCATCAACAAGC
AGCAGCCGGTGCTATGGGTCGAGAACGTCGACGTCGATGTCGACGGCACGCCGATCAAGTACGGCACGACCTATTTCGCG
GCCGACCGCGTGCAGTTGCTGATCGAGAACGACAACGTGCCCGGCCATGCGCGCTGA

Upstream 100 bases:

>100_bases
ACGATTCGTCGACGCATACGGCAATTTTTCATGAAACCGCCACCTGCCGCGCACTACAATGCGCGGCATGTCCATTGAAA
CGCAACGCAATGACAACGCC

Downstream 100 bases:

>100_bases
ACTCGCCGCGCGCGCCGGCGCCGCCCGCTTCGCCCTCTATTACGCGCCGCCGCGCGCATCCGCGTGGTGGCGCGCCGGCT
GTGCGTGGCTCGGCCGTGAT

Product: phosphonates metabolism transcriptional regulator PhnF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MTSVDHLLQDSPLERGSGVSVWRQIEQILAAEIAANGFGEDGRLPSEGELAKRFDVNRHTVRRAMLGLAASGLVSVEQGR
GTFVQSGAIDYTIGRRTRFTENLNRHNHAAVGKMLSAARVKADPATAKALGLRAGAYVYRIESIHEADGVPLTYARSAYP
AARFAELPAALERTERVTDALAEYGVADYLRKWSRIGSVLPEAAIARRLGINKQQPVLWVENVDVDVDGTPIKYGTTYFA
ADRVQLLIENDNVPGHAR

Sequences:

>Translated_258_residues
MTSVDHLLQDSPLERGSGVSVWRQIEQILAAEIAANGFGEDGRLPSEGELAKRFDVNRHTVRRAMLGLAASGLVSVEQGR
GTFVQSGAIDYTIGRRTRFTENLNRHNHAAVGKMLSAARVKADPATAKALGLRAGAYVYRIESIHEADGVPLTYARSAYP
AARFAELPAALERTERVTDALAEYGVADYLRKWSRIGSVLPEAAIARRLGINKQQPVLWVENVDVDVDGTPIKYGTTYFA
ADRVQLLIENDNVPGHAR
>Mature_257_residues
TSVDHLLQDSPLERGSGVSVWRQIEQILAAEIAANGFGEDGRLPSEGELAKRFDVNRHTVRRAMLGLAASGLVSVEQGRG
TFVQSGAIDYTIGRRTRFTENLNRHNHAAVGKMLSAARVKADPATAKALGLRAGAYVYRIESIHEADGVPLTYARSAYPA
ARFAELPAALERTERVTDALAEYGVADYLRKWSRIGSVLPEAAIARRLGINKQQPVLWVENVDVDVDGTPIKYGTTYFAA
DRVQLLIENDNVPGHAR

Specific function: Belongs To An Operon Involved In Alkylphosphonate Uptake And C-P Lyase. Exact Function Not Known. By Similarity Could Be A Transcriptional Regulator. [C]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=213, Percent_Identity=31.4553990610329, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082252, Length=243, Percent_Identity=24.2798353909465, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786950, Length=223, Percent_Identity=24.6636771300448, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790118, Length=227, Percent_Identity=23.3480176211454, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788418, Length=211, Percent_Identity=24.1706161137441, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28178; Mature: 28047

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSVDHLLQDSPLERGSGVSVWRQIEQILAAEIAANGFGEDGRLPSEGELAKRFDVNRHT
CCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHH
VRRAMLGLAASGLVSVEQGRGTFVQSGAIDYTIGRRTRFTENLNRHNHAAVGKMLSAARV
HHHHHHHHHHHCCEEEECCCCCEEECCCEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHH
KADPATAKALGLRAGAYVYRIESIHEADGVPLTYARSAYPAARFAELPAALERTERVTDA
CCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHH
LAEYGVADYLRKWSRIGSVLPEAAIARRLGINKQQPVLWVENVDVDVDGTPIKYGTTYFA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCEECCCEEEE
ADRVQLLIENDNVPGHAR
CCEEEEEEECCCCCCCCC
>Mature Secondary Structure 
TSVDHLLQDSPLERGSGVSVWRQIEQILAAEIAANGFGEDGRLPSEGELAKRFDVNRHT
CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHH
VRRAMLGLAASGLVSVEQGRGTFVQSGAIDYTIGRRTRFTENLNRHNHAAVGKMLSAARV
HHHHHHHHHHHCCEEEECCCCCEEECCCEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHH
KADPATAKALGLRAGAYVYRIESIHEADGVPLTYARSAYPAARFAELPAALERTERVTDA
CCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHH
LAEYGVADYLRKWSRIGSVLPEAAIARRLGINKQQPVLWVENVDVDVDGTPIKYGTTYFA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCEECCCEEEE
ADRVQLLIENDNVPGHAR
CCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431; 9889346 [H]