Click here to switch to the map view.

The map label for this gene is lptF [H]

Identifier: 126453581

GI number: 126453581

Start: 997853

End: 998950

Strand: Reverse

Name: lptF [H]

Synonym: BURPS1106A_1021

Alternate gene names: 126453581

Gene position: 998950-997853 (Counterclockwise)

Preceding gene: 126452021

Following gene: 126453481

Centisome position: 25.05

GC content: 64.48

Gene sequence:

>1098_bases
ATGATCTTCGAACGCTCCCTCCAGCGCGAGCTTGCGTACACCGCCGGCGCCGTCTTCATGGTGCTGCTCACGATCATGCT
GACGTCGATGATGATTCGCATCGTCGGCTACGCCGCGTCCGGCGAGGTGAATCCGAAGGACGTGCTGGTCCTGATCGGCC
TCACCGTGATCGGCTATCTCGCGATGATTCTCGTCGGCACGCTGTTCGTGTCGATCCTGTTCGTGCTCACGCGCTGGTAC
AAGGATTCCGAGATGGTCGTCTGGCTCGCGTCCGGCGTGAGCCTCACGCGGCTCATCAAGCCGATCGGCGTGTTCGCGAC
GCCGATCGTGATCCTGATCGCCTTCTTCGCGTTCGTCGGCTGGCCGTGGTCGAACCAGCAGAGCAAGCTCATCAAGGCGC
GCTTCCAGCAGCGCGACGAGGTGTCGTTGCTCGCGCCCGGCCAGTTCCGCGAGTCCGCGGCGAACCACCGCGTGTTCTTC
ATCGAGAAGATGTCGCCCGATCAGGCGAAGGTGCAGAACGTGTTCGTCACGACGACCGAGCACGGCAAGGTGAACGTCGT
CGTGTCGCAGACGGGCCATACCGAGACGATGAAGAACGGCGACCGCTTCATCGTGCTCGAGAACGGCCGCCGCTACGACG
GCGTGCCCGGCCAGCCGAACTTCAAGATCATGGAGTTCGAGCGCTACGGCGTGAAGATCCAGAGCAAGCAGATCGTGAGC
CAGCCGACGACCACCGGCACGTCGACGCCCGACCTGCTGCGCAACCCGACCAACCAGAACCTCGCCGAATTCGCGTGGCG
CGCCGGGCTGCCGCTCATCGCGATCAACCTGATGATCCTCGCGATCCCGCTCGCGTATCAGAACCCGCGCCGCGGGCGGA
CCGTGAACCTCGTGATGGCCGTGCTGATCTACCTCACCTATTCGAATCTGCTGAACGTCGTCCAGTCGCAAATGGAACGG
GGCAAGATTGCGTTCGGGCTCGGGCTCATCGGGCTGCACGTAATCGTCGCCGGCATCGTCGCGCTCCTGTTCTGGCTGCG
CGTGCGCAACCGGCCCCTCTTCTCGCGCGCCGCGGCCGGCCGCTCGCAGGGGGCCTGA

Upstream 100 bases:

>100_bases
ATCTGGGCTAAGGATGAAAGCCGCAATTATCCGCTATTTTTCCCGTGCGGCGTGAGCGCCCCCCACTCGTGCGCTGTTTC
CCGCCCTCTTCGCATCAATA

Downstream 100 bases:

>100_bases
CCGATGCGTCTCTACGAAAAATATTTCGCGCGGCAGATCTACGTCACGTTCATCTTCGTGCTGTTCGCGTTTTCAGGGCT
GTTCTTCTTCTTCGACCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MIFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLAMILVGTLFVSILFVLTRWY
KDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGWPWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFF
IEKMSPDQAKVQNVFVTTTEHGKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVS
QPTTTGTSTPDLLRNPTNQNLAEFAWRAGLPLIAINLMILAIPLAYQNPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMER
GKIAFGLGLIGLHVIVAGIVALLFWLRVRNRPLFSRAAAGRSQGA

Sequences:

>Translated_365_residues
MIFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLAMILVGTLFVSILFVLTRWY
KDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGWPWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFF
IEKMSPDQAKVQNVFVTTTEHGKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVS
QPTTTGTSTPDLLRNPTNQNLAEFAWRAGLPLIAINLMILAIPLAYQNPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMER
GKIAFGLGLIGLHVIVAGIVALLFWLRVRNRPLFSRAAAGRSQGA
>Mature_365_residues
MIFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLAMILVGTLFVSILFVLTRWY
KDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGWPWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFF
IEKMSPDQAKVQNVFVTTTEHGKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVS
QPTTTGTSTPDLLRNPTNQNLAEFAWRAGLPLIAINLMILAIPLAYQNPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMER
GKIAFGLGLIGLHVIVAGIVALLFWLRVRNRPLFSRAAAGRSQGA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=367, Percent_Identity=29.1553133514986, Blast_Score=118, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 40676; Mature: 40676

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
AMILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVG
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
WPWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTE
CCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHCCCCEEEEEECCCCCHHHHCEEEEEEEC
HGKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVS
CCEEEEEEECCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEEHCCCEEEECHHHHC
QPTTTGTSTPDLLRNPTNQNLAEFAWRAGLPLIAINLMILAIPLAYQNPRRGRTVNLVMA
CCCCCCCCCHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
VLIYLTYSNLLNVVQSQMERGKIAFGLGLIGLHVIVAGIVALLFWLRVRNRPLFSRAAAG
HHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
RSQGA
CCCCC
>Mature Secondary Structure
MIFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
AMILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVG
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
WPWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTE
CCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHCCCCEEEEEECCCCCHHHHCEEEEEEEC
HGKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVS
CCEEEEEEECCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEEHCCCEEEECHHHHC
QPTTTGTSTPDLLRNPTNQNLAEFAWRAGLPLIAINLMILAIPLAYQNPRRGRTVNLVMA
CCCCCCCCCHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
VLIYLTYSNLLNVVQSQMERGKIAFGLGLIGLHVIVAGIVALLFWLRVRNRPLFSRAAAG
HHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
RSQGA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]