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The map label for this gene is cyt [H]

Identifier: 126452021

GI number: 126452021

Start: 1001942

End: 1002265

Strand: Reverse

Name: cyt [H]

Synonym: BURPS1106A_1025

Alternate gene names: 126452021

Gene position: 1002265-1001942 (Counterclockwise)

Preceding gene: 126453159

Following gene: 126453581

Centisome position: 25.13

GC content: 64.81

Gene sequence:

>324_bases
ATGAAGAGAACGACCTTGCGCCTGACGGCATTCGCGCTCGTTGCCGCGGCCGCAAATACGCAGGCGCAGCAAGCTGACGG
CCTCGCGCTCGCGCAACGCAAGAACTGCATGGCCTGCCATGCAATCGACAAGACGCTGATGGGACCGTCGTTCCACGCGA
TCGCCGACAAATACGCGGCGCGCGGCGACGCCGCCGGCTATCTCGCGCAGACGATCGTCAAGGGCAGCGTCGGCGTGTGG
GGCAACGTGCCGATGCCTGCGAACACGCAATTGACGAGCGCCGAAGCCGGCACGCTCGCGCACTGGATTCTGTCGAGCAA
GTAA

Upstream 100 bases:

>100_bases
AAAGCGACAAGACGAAGAAGGGGGCGCGACGTACTCGCGCCCCCTTTCCTTTTATAATGCGCGCACCGCCAAGCCGGACA
CTGTGCCGGCGGAGACCAGC

Downstream 100 bases:

>100_bases
GCCGTTCGCATCGACGCGCGGCGCCGACGGCGCGCCCGCAGCGCGGCGCCCGACGGTTGCGCGCGCAACGCGATGCCGGC
GCGCGCCGCCTCCCCGTCCG

Product: cytochrome c family protein

Products: NA

Alternate protein names: Cytochrome c-551; Cytochrome c552 [H]

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MKRTTLRLTAFALVAAAANTQAQQADGLALAQRKNCMACHAIDKTLMGPSFHAIADKYAARGDAAGYLAQTIVKGSVGVW
GNVPMPANTQLTSAEAGTLAHWILSSK

Sequences:

>Translated_107_residues
MKRTTLRLTAFALVAAAANTQAQQADGLALAQRKNCMACHAIDKTLMGPSFHAIADKYAARGDAAGYLAQTIVKGSVGVW
GNVPMPANTQLTSAEAGTLAHWILSSK
>Mature_107_residues
MKRTTLRLTAFALVAAAANTQAQQADGLALAQRKNCMACHAIDKTLMGPSFHAIADKYAARGDAAGYLAQTIVKGSVGVW
GNVPMPANTQLTSAEAGTLAHWILSSK

Specific function: Monoheme c-type cytochrome. Probable electron donor to membrane cytochrome oxidase and to periplasmic nitrite reductase [H]

COG id: COG4654

COG function: function code C; Cytochrome c551/c552

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002324 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 11170; Mature: 11170

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTTLRLTAFALVAAAANTQAQQADGLALAQRKNCMACHAIDKTLMGPSFHAIADKYAA
CCCCHHHHHHHHHHHHHCCCCCHHCCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHC
RGDAAGYLAQTIVKGSVGVWGNVPMPANTQLTSAEAGTLAHWILSSK
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHEECCC
>Mature Secondary Structure
MKRTTLRLTAFALVAAAANTQAQQADGLALAQRKNCMACHAIDKTLMGPSFHAIADKYAA
CCCCHHHHHHHHHHHHHCCCCCHHCCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHC
RGDAAGYLAQTIVKGSVGVWGNVPMPANTQLTSAEAGTLAHWILSSK
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9746537; 12700255 [H]