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The map label for this gene is 126453556

Identifier: 126453556

GI number: 126453556

Start: 3652079

End: 3652639

Strand: Reverse

Name: 126453556

Synonym: BURPS1106A_3743

Alternate gene names: NA

Gene position: 3652639-3652079 (Counterclockwise)

Preceding gene: 126452834

Following gene: 126451980

Centisome position: 91.58

GC content: 75.58

Gene sequence:

>561_bases
ATGACGATGGCGGGCGACCGGTTGCGCTGCTTCGTCGCGCTGACGCTCGATCGGGCGTCGCGCGACGCGCTGGCCGCGCT
GCCCGTCGCCGCCGGCGCGCGGCGCACGCCGCGCGACCAACTGCACGTGACGATCGCGTTCCTCGGCGCGATCGAGCGCG
CGAAGAGCGAACTGCTCGGCGCGCGCATCCCCGCGCTCGCGGCGGCCGGCGCGGTGCCGCCCGTCGACGTCGAGCGCGTC
GTCTGCTGGCCGAGCACCGCGCATGCGCGGCTCGTCGTCGCGGAGCTCGCGCCGCAGCCGTCGTTGCTCGCGCTCGGCGA
GCGGGTGGGCGGCGCGCTGCGCGCGCTCGGCCTGCCGCCCGACAGCCGTGCGTTCAAGCCGCACGTGACGATCGCGCGGT
TTCCTCGCGACGCGCATCGCGTGACGATTGACGGCGCGTGCGGCGCCGAGCGCCGCTCGCCGTTCGCGTTGCGGTTCGAA
ACGCTCACGCTCTACGAGAGCGTCCTCACGCGCATGGGCGCCGAGCATCGGGTGCTCGCGGCAGCGGCGCTGCCGGCATA
A

Upstream 100 bases:

>100_bases
GGGGCGAGCACGGGCCGTTGCCGCAAGGCGACAAGCTCGCGGCGGGGCGCGCCTCGGGTGCCGACGCGGTACGGGCGGCG
GGGCCGGTCGGCTCCGCGCG

Downstream 100 bases:

>100_bases
GCACGGCGCGGGGGCGGCGGGCCGCTCGCGCGCGGCTTCATCCCCGCTGCGCGCATGCGGCTTCGCCGACGAGCGGCCCG
GCGAGACGGGCCACCGGGCG

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: 2 5' RNA Ligase

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MTMAGDRLRCFVALTLDRASRDALAALPVAAGARRTPRDQLHVTIAFLGAIERAKSELLGARIPALAAAGAVPPVDVERV
VCWPSTAHARLVVAELAPQPSLLALGERVGGALRALGLPPDSRAFKPHVTIARFPRDAHRVTIDGACGAERRSPFALRFE
TLTLYESVLTRMGAEHRVLAAAALPA

Sequences:

>Translated_186_residues
MTMAGDRLRCFVALTLDRASRDALAALPVAAGARRTPRDQLHVTIAFLGAIERAKSELLGARIPALAAAGAVPPVDVERV
VCWPSTAHARLVVAELAPQPSLLALGERVGGALRALGLPPDSRAFKPHVTIARFPRDAHRVTIDGACGAERRSPFALRFE
TLTLYESVLTRMGAEHRVLAAAALPA
>Mature_185_residues
TMAGDRLRCFVALTLDRASRDALAALPVAAGARRTPRDQLHVTIAFLGAIERAKSELLGARIPALAAAGAVPPVDVERVV
CWPSTAHARLVVAELAPQPSLLALGERVGGALRALGLPPDSRAFKPHVTIARFPRDAHRVTIDGACGAERRSPFALRFET
LTLYESVLTRMGAEHRVLAAAALPA

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19734; Mature: 19603

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMAGDRLRCFVALTLDRASRDALAALPVAAGARRTPRDQLHVTIAFLGAIERAKSELLG
CCCCCCCEEEEEEEEECCCCCCHHHHCCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHHH
ARIPALAAAGAVPPVDVERVVCWPSTAHARLVVAELAPQPSLLALGERVGGALRALGLPP
HHCCHHHHCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCHHHHHHHHCHHHHCCCCCC
DSRAFKPHVTIARFPRDAHRVTIDGACGAERRSPFALRFETLTLYESVLTRMGAEHRVLA
CCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEE
AAALPA
EECCCC
>Mature Secondary Structure 
TMAGDRLRCFVALTLDRASRDALAALPVAAGARRTPRDQLHVTIAFLGAIERAKSELLG
CCCCCCEEEEEEEEECCCCCCHHHHCCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHHH
ARIPALAAAGAVPPVDVERVVCWPSTAHARLVVAELAPQPSLLALGERVGGALRALGLPP
HHCCHHHHCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCHHHHHHHHCHHHHCCCCCC
DSRAFKPHVTIARFPRDAHRVTIDGACGAERRSPFALRFETLTLYESVLTRMGAEHRVLA
CCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEE
AAALPA
EECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA