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The map label for this gene is fliM [H]

Identifier: 126453439

GI number: 126453439

Start: 28737

End: 29735

Strand: Direct

Name: fliM [H]

Synonym: BURPS1106A_0029

Alternate gene names: 126453439

Gene position: 28737-29735 (Clockwise)

Preceding gene: 126452861

Following gene: 126454703

Centisome position: 0.72

GC content: 63.26

Gene sequence:

>999_bases
ATGGGCCACGAAGAATTCATGTCCCAGGAGGAGGTGGATGCACTCCTCAAGGGCGTCACGGGCGAAGACGACTCGGCCGA
CGAACCGGCCGAGGCGTCGGGCATTCGCCCCTACAACATCGCGACGCAGGAGCGGATCGTTCGCGGCCGGATGCCCGGCC
TCGAAATCATCAACGATCGCTTCGCGCGCCTCTTGCGGATCGGCATCTTCAACTTCATGCGGCGCACGGCGGAAATCTCC
GTGAGCCAGGTGAAGGTGCAGAAGTACAGCGAGTTCACGCGCAACCTGCCGATCCCGACCAATCTGAACCTCGTGCACGT
GAAGCCGCTGCGCGGCACGTCGCTGTTCGTGTTCGATCCGAACCTCGTGTTCTTCGTCGTCGACAACCTGTTCGGCGGCG
ACGGGCGTTTCCACACGCGCGTCGAAGGGCGCGACTTCACGGCGACCGAACAGCGGATCATCGGCAAGCTGCTCAATCTC
GTGTTCGAGCACTACGCGAGCGCGTGGAAGAGCGTGCGGCCGTTGCAGTTCGAGTTCGTGCGCTCGGAGATGCACACGCA
GTTCGCGAACGTCGCGACGCCGAACGAGATCGTGATCGTCACCCAGTTCTCGATCGAGTTCGGGCCGACGGGCGGCACGC
TGCACATCTGCATGCCCTACTCGATGATCGAGCCGATCCGCGACGTGCTGAGCTCGCCGATCCAGGGCGAGGCGCTCGAG
GTGGACCGCCGCTGGGTGCGCGTGCTGTCGCAGCAGGTGCAGTCGGCGGAAGTGGAACTGGTCGCGGATCTCGCCGAGGT
CCCGACGACGTTCGAGAAGATTCTCAACCTGCGCACGGGCGACGTGCTGCCGCTCGACATCACGGATTCGATCACCGCGA
AGGTCGACGGCGTGCCGGTGATGGAGTGCGGATACGGCATTTTCAATGGCCAGTACGCGTTGCGCGTGCAGAGGATGATC
AGCGCAAGCGACACGATGAAGGAAGGTGGATATGACTGA

Upstream 100 bases:

>100_bases
ATCGAGCAGCCGACCCAGCCGGGCAATCAGAGCGCACGCGTCGACGACGTGCTGTTCACCGAGTTCGTCGTCCAATAACG
CCGCCGGCAAAGGAGCGCGC

Downstream 100 bases:

>100_bases
GTTGAACTCGACCCCCGAGGCCGACGGCATCGACGAGCCGGCGTTTGCGGACACCGCGATGAGCGCTGCCGCGGCCGGGA
ACGCGGCGGGTGCCGCGCCG

Product: flagellar motor switch protein FliM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MGHEEFMSQEEVDALLKGVTGEDDSADEPAEASGIRPYNIATQERIVRGRMPGLEIINDRFARLLRIGIFNFMRRTAEIS
VSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNL
VFEHYASAWKSVRPLQFEFVRSEMHTQFANVATPNEIVIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALE
VDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLDITDSITAKVDGVPVMECGYGIFNGQYALRVQRMI
SASDTMKEGGYD

Sequences:

>Translated_332_residues
MGHEEFMSQEEVDALLKGVTGEDDSADEPAEASGIRPYNIATQERIVRGRMPGLEIINDRFARLLRIGIFNFMRRTAEIS
VSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNL
VFEHYASAWKSVRPLQFEFVRSEMHTQFANVATPNEIVIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALE
VDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLDITDSITAKVDGVPVMECGYGIFNGQYALRVQRMI
SASDTMKEGGYD
>Mature_331_residues
GHEEFMSQEEVDALLKGVTGEDDSADEPAEASGIRPYNIATQERIVRGRMPGLEIINDRFARLLRIGIFNFMRRTAEISV
SQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLV
FEHYASAWKSVRPLQFEFVRSEMHTQFANVATPNEIVIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEV
DRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLDITDSITAKVDGVPVMECGYGIFNGQYALRVQRMIS
ASDTMKEGGYD

Specific function: FliM is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1868

COG function: function code N; Flagellar motor switch protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliM family [H]

Homologues:

Organism=Escherichia coli, GI1788255, Length=326, Percent_Identity=51.5337423312883, Blast_Score=350, Evalue=7e-98,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001689
- InterPro:   IPR001543 [H]

Pfam domain/function: PF02154 FliM; PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 37335; Mature: 37204

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHEEFMSQEEVDALLKGVTGEDDSADEPAEASGIRPYNIATQERIVRGRMPGLEIINDR
CCHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHCCCCCHHHHHHH
FARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECC
NLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEFV
CEEEEEEEHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
RSEMHTQFANVATPNEIVIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALE
HHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCEEEEEECHHHHHHHHHHHCCCCCCCHHH
VDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLDITDSITAKVDGVPV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCEEEECCCEE
MECGYGIFNGQYALRVQRMISASDTMKEGGYD
HHCCCCEECCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GHEEFMSQEEVDALLKGVTGEDDSADEPAEASGIRPYNIATQERIVRGRMPGLEIINDR
CHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHCCCCCHHHHHHH
FARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECC
NLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEFV
CEEEEEEEHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
RSEMHTQFANVATPNEIVIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALE
HHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCEEEEEECHHHHHHHHHHHCCCCCCCHHH
VDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLDITDSITAKVDGVPV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCEEEECCCEE
MECGYGIFNGQYALRVQRMISASDTMKEGGYD
HHCCCCEECCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3519573; 9097040; 9278503; 2651416 [H]