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The map label for this gene is fliN [H]

Identifier: 126454703

GI number: 126454703

Start: 29728

End: 30225

Strand: Direct

Name: fliN [H]

Synonym: BURPS1106A_0030

Alternate gene names: 126454703

Gene position: 29728-30225 (Clockwise)

Preceding gene: 126453439

Following gene: 126452949

Centisome position: 0.75

GC content: 68.07

Gene sequence:

>498_bases
ATGACTGAGTTGAACTCGACCCCCGAGGCCGACGGCATCGACGAGCCGGCGTTTGCGGACACCGCGATGAGCGCTGCCGC
GGCCGGGAACGCGGCGGGTGCCGCGCCGCAGGAGGAAATGGCGATGGACGACTGGGCCGCCGCGCTCGCCGAGCAGAATC
AGCAGCCGATCGAGACGGGCGCGACGGGCGCCGGCGTGTTCCGGCCGCTGTCGAAGGCCACGGCGAGCTCGACGCACAAC
GACATCGACCTGATTCTCGACATCCCGGTCAAGATGACGGTCGAGCTCGGCCGCACGAAGATCGCGATCCGCAACCTGCT
GCAGCTCGCGCAGGGCTCGGTGGTCGAGCTCGACGGGCTCGCCGGCGAGCCGATGGACGTGCTCGTCAACGGCTGCCTGA
TCGCGCAGGGCGAAGTGGTGGTCGTCAACGACAAGTTCGGCATCCGGCTCACCGACATCATCACGCCGTCCGAACGCATC
CGGAAGCTGAACCGATGA

Upstream 100 bases:

>100_bases
GTGCCGGTGATGGAGTGCGGATACGGCATTTTCAATGGCCAGTACGCGTTGCGCGTGCAGAGGATGATCAGCGCAAGCGA
CACGATGAAGGAAGGTGGAT

Downstream 100 bases:

>100_bases
AACCGCGCTTCGCGCCGCTCGCCGCGCGGGCTGTTCCGGTGTGCGTTCCGGCGTTCCTTTCGCCGCGCCGGGCAGCCGAA
CGCGCGCCGCGCGGCAGGCG

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MTELNSTPEADGIDEPAFADTAMSAAAAGNAAGAAPQEEMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKATASSTHN
DIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERI
RKLNR

Sequences:

>Translated_165_residues
MTELNSTPEADGIDEPAFADTAMSAAAAGNAAGAAPQEEMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKATASSTHN
DIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERI
RKLNR
>Mature_164_residues
TELNSTPEADGIDEPAFADTAMSAAAAGNAAGAAPQEEMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKATASSTHND
IDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERIR
KLNR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=126, Percent_Identity=62.6984126984127, Blast_Score=157, Evalue=4e-40,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 17311; Mature: 17180

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELNSTPEADGIDEPAFADTAMSAAAAGNAAGAAPQEEMAMDDWAAALAEQNQQPIETG
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
ATGAGVFRPLSKATASSTHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL
CCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHCCCEEEECCC
AGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERIRKLNR
CCCCHHHHHCCEEEECCCEEEEECCCCEEEEEEECCHHHHHHCCC
>Mature Secondary Structure 
TELNSTPEADGIDEPAFADTAMSAAAAGNAAGAAPQEEMAMDDWAAALAEQNQQPIETG
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
ATGAGVFRPLSKATASSTHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL
CCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHCCCEEEECCC
AGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERIRKLNR
CCCCHHHHHCCEEEECCCEEEEECCCCEEEEEEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2651416; 9097040; 9278503 [H]