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The map label for this gene is yodF [H]

Identifier: 126453342

GI number: 126453342

Start: 1152197

End: 1153747

Strand: Direct

Name: yodF [H]

Synonym: BURPS1106A_1172

Alternate gene names: 126453342

Gene position: 1152197-1153747 (Clockwise)

Preceding gene: 126452521

Following gene: 126453232

Centisome position: 28.89

GC content: 65.96

Gene sequence:

>1551_bases
ATGAATCTGACCGCGACCTTCGTCTTCGTGCTGTTCTTCGTCGGCGTGACGATCATGGGTTTTCTCGCCGCGAACTGGCG
GCGCGGCAACCTCGCGCATCTCGACGAATGGGGGCTCGGCGGCCGGCGCTTCGGCACGGTCGTCACGTGGTTCCTGCTCG
GCGGCGATCTCTACACCGCGTACACGTTCGTCGCCGTGCCGGCGCTCGTGTTCGGCGCGGGCGCGATGGGCTTCTTCGCG
CTGCCGTACACGATCCTCATCTATCCGTTCGCGTTCGTCGTATTCCCGAAGCTCTGGAGCATCGCGAAGCGTCACGGCTA
CGTGACGGCCGCCGATTTCGTCAGCGCGCGCTACGGCAGCCGCTCGCTCGCGCTCGCCGTCGCGGTGACGGGCATCGTCG
CGACGATGCCGTACATCGCGCTGCAGCTCGTCGGCATCGAGGTGGTGATCGGCGGGCTCGGCTTCGACACCAAGGGCTTC
ATCGGCGATCTGCCGCTCATCATCGCGTTCGCGATCCTCGCCGCTTACACGTACACGTCGGGGCTGCGCGCGCCCGCGAT
GATCGCGATCGTCAAGGACATCCTGATCTACATCACGATCGCCGCGGCCGTGATCGTGATTCCGGCGAAGCTGGGCGGCT
TCGGGCACATCTTCGGCGCGGTGCCGCCCGCGAAGCTGCTGTTGAAAGCGCCCGACGCGGCGAGCCTGAACGGCTTCAGC
GCGTACACGACGCTCGCGATCGGCTCGGCGCTCGCGCTGTTCCTGTATCCGCACTCGGTGACGGCGATCCTGTCGTCGTC
GTCGGGCAACACGATCCGCCGCAACATGGCGATGCTGCCCGCGTACTCGTTCGTGCTCGGCCTGCTGGCGCTGCTCGGCT
ACATGGCGCTCGCATCGGGCGTGAAGGACATGCCGGAATACGCGCCGTACTTCAAGGCGTTCGGCCCGAATTTCGCGGTG
CCGGCGTTGTTCCTGCATTTCTTCCCGTCGTGGTTCGTCGGCGTCGCGTTCGCCGCGATCGGGATCGGCGCGCTCGTGCC
GGCGGCGATCATGTCGATCGCGGCCGCGAACCTGTACACGCGCAACATTCATCGCGAGTTCGTCAACCGCAACATGACGC
ACGATCAGGAAACGCACGTCGCGAAGCTCGTGTCGCTGATCGTGAAGGTCGGCGCGGTCGCGTTCATTCTCGGGCTGCCG
CTCACCTACGCGATCCAGCTGCAACTGCTCGGCGGGATCTGGATCATCCAGACGCTGCCCGCGATCGTGCTCGGCCTCTA
TACGCGCGTGCTCGACTATCGCGGGCTGCTCGCCGGCTGGGCGGCGGGGCTCGTCTGCGGCACGTGGATGGCGATCTCGC
TGAAGCTCGCGAGCTCGATCTTCACGATCCATCTGTTCGGCCATGCGATTCCGGGCTACGCGGCCGTTTGGGCGCTGGCC
GTGAATCTCGTCGTGTCGATCGTGGTCAGCGTGCTGGTTCGCGCGTTCGGGATCGCGCACGCGGAAGATCGCACGCGGCC
GGAGGATTATCTCGACGTCGTCGAGAGTTGA

Upstream 100 bases:

>100_bases
GGTATCAACTGCTGTGGGTGTTCGTTAGCGCGGTGATCACCGCGTTCGTCTATCAGAAGACGAAGCACTGCTGGAAGGGC
GTCCCGCGGGGAGACGGCAA

Downstream 100 bases:

>100_bases
CGGGCGATTTCGGGTCGATTTCGGGCCGGCCGGGCGTGCACGTGAAAACGCCCGCGGCGCGCGTCGCGCCGCGGGCGTCG
TAACGGTGCTTCATGAGCCG

Product: solute/sodium symporter (SSS) family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MNLTATFVFVLFFVGVTIMGFLAANWRRGNLAHLDEWGLGGRRFGTVVTWFLLGGDLYTAYTFVAVPALVFGAGAMGFFA
LPYTILIYPFAFVVFPKLWSIAKRHGYVTAADFVSARYGSRSLALAVAVTGIVATMPYIALQLVGIEVVIGGLGFDTKGF
IGDLPLIIAFAILAAYTYTSGLRAPAMIAIVKDILIYITIAAAVIVIPAKLGGFGHIFGAVPPAKLLLKAPDAASLNGFS
AYTTLAIGSALALFLYPHSVTAILSSSSGNTIRRNMAMLPAYSFVLGLLALLGYMALASGVKDMPEYAPYFKAFGPNFAV
PALFLHFFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYTRNIHREFVNRNMTHDQETHVAKLVSLIVKVGAVAFILGLP
LTYAIQLQLLGGIWIIQTLPAIVLGLYTRVLDYRGLLAGWAAGLVCGTWMAISLKLASSIFTIHLFGHAIPGYAAVWALA
VNLVVSIVVSVLVRAFGIAHAEDRTRPEDYLDVVES

Sequences:

>Translated_516_residues
MNLTATFVFVLFFVGVTIMGFLAANWRRGNLAHLDEWGLGGRRFGTVVTWFLLGGDLYTAYTFVAVPALVFGAGAMGFFA
LPYTILIYPFAFVVFPKLWSIAKRHGYVTAADFVSARYGSRSLALAVAVTGIVATMPYIALQLVGIEVVIGGLGFDTKGF
IGDLPLIIAFAILAAYTYTSGLRAPAMIAIVKDILIYITIAAAVIVIPAKLGGFGHIFGAVPPAKLLLKAPDAASLNGFS
AYTTLAIGSALALFLYPHSVTAILSSSSGNTIRRNMAMLPAYSFVLGLLALLGYMALASGVKDMPEYAPYFKAFGPNFAV
PALFLHFFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYTRNIHREFVNRNMTHDQETHVAKLVSLIVKVGAVAFILGLP
LTYAIQLQLLGGIWIIQTLPAIVLGLYTRVLDYRGLLAGWAAGLVCGTWMAISLKLASSIFTIHLFGHAIPGYAAVWALA
VNLVVSIVVSVLVRAFGIAHAEDRTRPEDYLDVVES
>Mature_516_residues
MNLTATFVFVLFFVGVTIMGFLAANWRRGNLAHLDEWGLGGRRFGTVVTWFLLGGDLYTAYTFVAVPALVFGAGAMGFFA
LPYTILIYPFAFVVFPKLWSIAKRHGYVTAADFVSARYGSRSLALAVAVTGIVATMPYIALQLVGIEVVIGGLGFDTKGF
IGDLPLIIAFAILAAYTYTSGLRAPAMIAIVKDILIYITIAAAVIVIPAKLGGFGHIFGAVPPAKLLLKAPDAASLNGFS
AYTTLAIGSALALFLYPHSVTAILSSSSGNTIRRNMAMLPAYSFVLGLLALLGYMALASGVKDMPEYAPYFKAFGPNFAV
PALFLHFFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYTRNIHREFVNRNMTHDQETHVAKLVSLIVKVGAVAFILGLP
LTYAIQLQLLGGIWIIQTLPAIVLGLYTRVLDYRGLLAGWAAGLVCGTWMAISLKLASSIFTIHLFGHAIPGYAAVWALA
VNLVVSIVVSVLVRAFGIAHAEDRTRPEDYLDVVES

Specific function: Unknown

COG id: COG0591

COG function: function code ER; Na+/proline symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001734 [H]

Pfam domain/function: PF00474 SSF [H]

EC number: NA

Molecular weight: Translated: 55102; Mature: 55102

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS50283 NA_SOLUT_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLTATFVFVLFFVGVTIMGFLAANWRRGNLAHLDEWGLGGRRFGTVVTWFLLGGDLYTA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCHHHHH
YTFVAVPALVFGAGAMGFFALPYTILIYPFAFVVFPKLWSIAKRHGYVTAADFVSARYGS
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHCCC
RSLALAVAVTGIVATMPYIALQLVGIEVVIGGLGFDTKGFIGDLPLIIAFAILAAYTYTS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHC
GLRAPAMIAIVKDILIYITIAAAVIVIPAKLGGFGHIFGAVPPAKLLLKAPDAASLNGFS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHEEECCCCCCCCCHH
AYTTLAIGSALALFLYPHSVTAILSSSSGNTIRRNMAMLPAYSFVLGLLALLGYMALASG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKDMPEYAPYFKAFGPNFAVPALFLHFFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYT
HHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNIHREFVNRNMTHDQETHVAKLVSLIVKVGAVAFILGLPLTYAIQLQLLGGIWIIQTLP
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
AIVLGLYTRVLDYRGLLAGWAAGLVCGTWMAISLKLASSIFTIHLFGHAIPGYAAVWALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VNLVVSIVVSVLVRAFGIAHAEDRTRPEDYLDVVES
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MNLTATFVFVLFFVGVTIMGFLAANWRRGNLAHLDEWGLGGRRFGTVVTWFLLGGDLYTA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCHHHHH
YTFVAVPALVFGAGAMGFFALPYTILIYPFAFVVFPKLWSIAKRHGYVTAADFVSARYGS
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHCCC
RSLALAVAVTGIVATMPYIALQLVGIEVVIGGLGFDTKGFIGDLPLIIAFAILAAYTYTS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHC
GLRAPAMIAIVKDILIYITIAAAVIVIPAKLGGFGHIFGAVPPAKLLLKAPDAASLNGFS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHEEECCCCCCCCCHH
AYTTLAIGSALALFLYPHSVTAILSSSSGNTIRRNMAMLPAYSFVLGLLALLGYMALASG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKDMPEYAPYFKAFGPNFAVPALFLHFFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYT
HHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNIHREFVNRNMTHDQETHVAKLVSLIVKVGAVAFILGLPLTYAIQLQLLGGIWIIQTLP
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
AIVLGLYTRVLDYRGLLAGWAAGLVCGTWMAISLKLASSIFTIHLFGHAIPGYAAVWALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VNLVVSIVVSVLVRAFGIAHAEDRTRPEDYLDVVES
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]