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The map label for this gene is ctrC [H]

Identifier: 126453307

GI number: 126453307

Start: 3203097

End: 3203879

Strand: Reverse

Name: ctrC [H]

Synonym: BURPS1106A_3287

Alternate gene names: 126453307

Gene position: 3203879-3203097 (Counterclockwise)

Preceding gene: 126453194

Following gene: 126454340

Centisome position: 80.33

GC content: 52.87

Gene sequence:

>783_bases
ATGACAAATTTCGGTCGATCGTTGGCGGTTCAGCGAAGAGTGATATTCGCATTGCTGATGCGGGAAGTCCTGACCCGGTA
CGGGCGTCACAACATCGGATTCCTGTGGCTATTTGTCGAGCCGATGATCTTCACGGTCGGGATTACCATTCTTTGGAATG
CGACAGGAGCGACTCACGGGTCGAATCTCCCTATTTCCGCGTTTGCTTTGACCGGCTATTCGACGGTGTTGCTTTGGCGA
AACATGCCCGGGCGGTGCAGTATGGCGGTCACGCCGAATTTGGCGCTGATGTATCACCGAAATGTCAAGGTCATAGATAT
TTTTATTGCTCGTATTCTGTTGGAGGTGGTCGGTAATACCGCATCCTTTTTCGTGTTGATGATTACATTTCATGCGCTGG
GCCTCGTTGACTATCCCGAGGATATTCTCGAGGTGATGTTTGCCTGGGTCATGATTATCTGGTTTGGTGCGTCGCTTGGT
TTCATCATTGGAGCGTTAAGCGAGAAGACGGAGCTCGTCGAGAAGCTTTGGCATCCGGTGACCTATCTGATGTTTCCGCT
ATCGGGCGCCATCTTCATGGTGGATTGGCTTTCGCCGGCATTTCAAAAAATCGTCCTGTGGCTGCCCATGGTGCACGGAG
TCGAAATGCTTCGCGAAGGGTACTTCGGCAGCCTCGTCGCGGCACATTATGATATCGGATATATGGCGTGCGCTTGCCTG
GCGATGTCTCTGGTCGGTCTCGCGCTGGTTCGCGACGTGGGTCGTGAGGTCACGCCAGAATGA

Upstream 100 bases:

>100_bases
TGTCCGGAACATCTTTGCCTGTTTCATTTTGGGGCTCGCGGCCTGGGGCGTGTTGAGCATGCTGGTAGCGGGTATTCGTG
AACATCAGGAATGACGCGCC

Downstream 100 bases:

>100_bases
TTCGACTGACTCGGGTCAAGAAAACGTATCAGACGAAATCCGGAGAGCGTACGGTTCTTGATGGCGTCGACGTTGATATA
GCAAGTGGAGAAAAGATCGG

Product: capsular polysaccharide export inner-membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MTNFGRSLAVQRRVIFALLMREVLTRYGRHNIGFLWLFVEPMIFTVGITILWNATGATHGSNLPISAFALTGYSTVLLWR
NMPGRCSMAVTPNLALMYHRNVKVIDIFIARILLEVVGNTASFFVLMITFHALGLVDYPEDILEVMFAWVMIIWFGASLG
FIIGALSEKTELVEKLWHPVTYLMFPLSGAIFMVDWLSPAFQKIVLWLPMVHGVEMLREGYFGSLVAAHYDIGYMACACL
AMSLVGLALVRDVGREVTPE

Sequences:

>Translated_260_residues
MTNFGRSLAVQRRVIFALLMREVLTRYGRHNIGFLWLFVEPMIFTVGITILWNATGATHGSNLPISAFALTGYSTVLLWR
NMPGRCSMAVTPNLALMYHRNVKVIDIFIARILLEVVGNTASFFVLMITFHALGLVDYPEDILEVMFAWVMIIWFGASLG
FIIGALSEKTELVEKLWHPVTYLMFPLSGAIFMVDWLSPAFQKIVLWLPMVHGVEMLREGYFGSLVAAHYDIGYMACACL
AMSLVGLALVRDVGREVTPE
>Mature_259_residues
TNFGRSLAVQRRVIFALLMREVLTRYGRHNIGFLWLFVEPMIFTVGITILWNATGATHGSNLPISAFALTGYSTVLLWRN
MPGRCSMAVTPNLALMYHRNVKVIDIFIARILLEVVGNTASFFVLMITFHALGLVDYPEDILEVMFAWVMIIWFGASLGF
IIGALSEKTELVEKLWHPVTYLMFPLSGAIFMVDWLSPAFQKIVLWLPMVHGVEMLREGYFGSLVAAHYDIGYMACACLA
MSLVGLALVRDVGREVTPE

Specific function: May form an ATP-driven capsule polysaccharide export apparatus, in association with the CtrB and CtrD proteins [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29216; Mature: 29085

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNFGRSLAVQRRVIFALLMREVLTRYGRHNIGFLWLFVEPMIFTVGITILWNATGATHG
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHEEECCCCCCC
SNLPISAFALTGYSTVLLWRNMPGRCSMAVTPNLALMYHRNVKVIDIFIARILLEVVGNT
CCCCCHHEECCCHHEEEEECCCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHCCH
ASFFVLMITFHALGLVDYPEDILEVMFAWVMIIWFGASLGFIIGALSEKTELVEKLWHPV
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TYLMFPLSGAIFMVDWLSPAFQKIVLWLPMVHGVEMLREGYFGSLVAAHYDIGYMACACL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AMSLVGLALVRDVGREVTPE
HHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TNFGRSLAVQRRVIFALLMREVLTRYGRHNIGFLWLFVEPMIFTVGITILWNATGATHG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHEEECCCCCCC
SNLPISAFALTGYSTVLLWRNMPGRCSMAVTPNLALMYHRNVKVIDIFIARILLEVVGNT
CCCCCHHEECCCHHEEEEECCCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHCCH
ASFFVLMITFHALGLVDYPEDILEVMFAWVMIIWFGASLGFIIGALSEKTELVEKLWHPV
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TYLMFPLSGAIFMVDWLSPAFQKIVLWLPMVHGVEMLREGYFGSLVAAHYDIGYMACACL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AMSLVGLALVRDVGREVTPE
HHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1659649; 10710307 [H]