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The map label for this gene is ydcN [C]

Identifier: 126453277

GI number: 126453277

Start: 987014

End: 987577

Strand: Direct

Name: ydcN [C]

Synonym: BURPS1106A_1008

Alternate gene names: 126453277

Gene position: 987014-987577 (Clockwise)

Preceding gene: 126451500

Following gene: 126453597

Centisome position: 24.75

GC content: 63.65

Gene sequence:

>564_bases
ATGACGATCCGGCTGAAGCTGTTGAGGAAGCAGAAAGGGTGGACGCTCGACGTGCTGGCCGAAGCGACCGGCCTCACGAA
GAGCTATTTGTCGAAGGTCGAGCGCGGCCTGAGCGTGCCGTCGATCGCGGTTGCGCTGAAGCTGTCGAAGGCGCTGCAGG
TCGACGTCGAGCAACTGTTCTCGGAGGGCCGTGACCGCGAGCTGATCACGGTCACGCGCGCGTCGGAACGCACGTCGATG
GGCCGCGCGTCGAGCGAGCGCGTGCGTACGTACGAGAGCATCGCCGCGGGCGTCGCGCCGAAGAAGCTATTGCCGTTCAT
CGTGCATCCGCCGCGCGATTACGTGAGCTCGGCGTTTCGCGAGCACGAAGGCGAAGAGATGCTGTTCGTCCACAGGGGCA
GCGTCGAGATCGAATTTCCGAACGAGACGATCAAGCTGAAAACGGGCGATTCGGTCTATTTCAATGCGCTGATTCCGCAC
CGGATGCGCAGCGTCGGCGCGACGCCGGCGGAGGTACTCGTCGTCGTGAGCAACGACGAGGGCGTGCAGGAAGACGCGCA
ATAG

Upstream 100 bases:

>100_bases
GTTCTTGGTGCGTCGCTGCGACACATCAAGAACACGAAGTCGATTATAGGACACAAAGTGTCATGAGATACAATCGGTTT
TTCAAAAGACATGTGCCGTC

Downstream 100 bases:

>100_bases
CGGTGGGCCGCATCGGCCGTATCGCGCGCGTTCGTCCGTGTATGCGGCATGCGCGGCGCGGCGGGTGACCGGAAGGCGGC
GATGATGGGCGGCGGGCGGT

Product: DNA-binding protein

Products: NA

Alternate protein names: Transcriptional Regulator; XRE Family Transcriptional Regulator; MerR Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator XRE Family With Cupin Sensor; Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator HTH_3 Family; Transcriptional Regulator Protein; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator MerR Family; HTH-Type Transcriptional Regulator; Cupin 2 Barrel Domain-Containing Protein; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Transcriptional Regulator-Like Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Helix-Turn-Helix Family; Transcriptional Regulatory Protein; Epoxidase; Helix-Turn-Helix/Cupin Domain Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcription Regulator Protein; Transcriptional Regulator Cro/CI Family; Transcription Regulator; XRE Family-Like Protein; HTH_3family Transcriptional Regulator

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MTIRLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSEGRDRELITVTRASERTSM
GRASSERVRTYESIAAGVAPKKLLPFIVHPPRDYVSSAFREHEGEEMLFVHRGSVEIEFPNETIKLKTGDSVYFNALIPH
RMRSVGATPAEVLVVVSNDEGVQEDAQ

Sequences:

>Translated_187_residues
MTIRLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSEGRDRELITVTRASERTSM
GRASSERVRTYESIAAGVAPKKLLPFIVHPPRDYVSSAFREHEGEEMLFVHRGSVEIEFPNETIKLKTGDSVYFNALIPH
RMRSVGATPAEVLVVVSNDEGVQEDAQ
>Mature_186_residues
TIRLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSEGRDRELITVTRASERTSMG
RASSERVRTYESIAAGVAPKKLLPFIVHPPRDYVSSAFREHEGEEMLFVHRGSVEIEFPNETIKLKTGDSVYFNALIPHR
MRSVGATPAEVLVVVSNDEGVQEDAQ

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20780; Mature: 20649

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF
CEEEEEEECCCCCCEEEEHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
SEGRDRELITVTRASERTSMGRASSERVRTYESIAAGVAPKKLLPFIVHPPRDYVSSAFR
HCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHHCCCCHHHCCEEECCCHHHHHHHHH
EHEGEEMLFVHRGSVEIEFPNETIKLKTGDSVYFNALIPHRMRSVGATPAEVLVVVSNDE
HCCCCEEEEEECCEEEEEECCCEEEEEECCCEEEEEHHHHHHHHCCCCCHHEEEEEECCC
GVQEDAQ
CCCCCCC
>Mature Secondary Structure 
TIRLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF
EEEEEEECCCCCCEEEEHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
SEGRDRELITVTRASERTSMGRASSERVRTYESIAAGVAPKKLLPFIVHPPRDYVSSAFR
HCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHHCCCCHHHCCEEECCCHHHHHHHHH
EHEGEEMLFVHRGSVEIEFPNETIKLKTGDSVYFNALIPHRMRSVGATPAEVLVVVSNDE
HCCCCEEEEEECCEEEEEECCCEEEEEECCCEEEEEHHHHHHHHCCCCCHHEEEEEECCC
GVQEDAQ
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA