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The map label for this gene is fimA [H]

Identifier: 126453258

GI number: 126453258

Start: 1863636

End: 1864148

Strand: Direct

Name: fimA [H]

Synonym: BURPS1106A_1909

Alternate gene names: 126453258

Gene position: 1863636-1864148 (Clockwise)

Preceding gene: 126453759

Following gene: 126452598

Centisome position: 46.73

GC content: 67.25

Gene sequence:

>513_bases
ATGAAAAAAGCTCTCCTGTCCGCCGTCGCCTGCGCCGCGTTGTCCACGTCCGCATTCGCCGCCGGCACCGGCACCCTCAA
CTTCACGGGCGAGATCGTCGCCGGCGCGTGCGGCATCGACGCGGGCTCGGTGGACCAGACCGTGCGCCTCGGCTTCGTCC
CCGCGAACACGTTCAAGGCGGCGGGCGACAAGTCGACGCCGCAGAACTTCGACATCAAGCTCGTCGACTGCGACACGAGC
GTCGCGAAGAACGCGTACTTCACGTTCACGGGCACGTCGAACGCGACGCAGCCGAAGCTGATCGCCACCGTCGGCTCGGC
GACGAACGTCGGCATCCGTCTGCAATCGGCGTCGGGCGAATACCTCGACAACGGCGCGGAGCAGAAAGGCCCGGTCGTGC
TGAGCAACGGCACGAGCGTCGCGCGCTTCGCCGCGATGTACGAATCGACCGCGGCGAGCGTGACGCCAGGCACGGCCGAC
GGCGTCGCGAACTTCACGGTTCGCTACCAGTAA

Upstream 100 bases:

>100_bases
GACGAATCAAGACCAATGCATTGCAAAGCATTTCTCGCGTGCGATGCGAATACGTCCGGCAAATCGTCCCAATCCCATTA
GTCACGTTACGGAACCAGCC

Downstream 100 bases:

>100_bases
GCCGGCGCGGCTCGACGAGCCGCACCGCGAGGAAAGGGCGCGCGCCTTTTCCTCGCGCGAATCCGCTTCGCGTTCCCGCT
TTTTCCGCGATCCCCATCCC

Product: fimbrial protein

Products: NA

Alternate protein names: Type-1A pilin [H]

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MKKALLSAVACAALSTSAFAAGTGTLNFTGEIVAGACGIDAGSVDQTVRLGFVPANTFKAAGDKSTPQNFDIKLVDCDTS
VAKNAYFTFTGTSNATQPKLIATVGSATNVGIRLQSASGEYLDNGAEQKGPVVLSNGTSVARFAAMYESTAASVTPGTAD
GVANFTVRYQ

Sequences:

>Translated_170_residues
MKKALLSAVACAALSTSAFAAGTGTLNFTGEIVAGACGIDAGSVDQTVRLGFVPANTFKAAGDKSTPQNFDIKLVDCDTS
VAKNAYFTFTGTSNATQPKLIATVGSATNVGIRLQSASGEYLDNGAEQKGPVVLSNGTSVARFAAMYESTAASVTPGTAD
GVANFTVRYQ
>Mature_170_residues
MKKALLSAVACAALSTSAFAAGTGTLNFTGEIVAGACGIDAGSVDQTVRLGFVPANTFKAAGDKSTPQNFDIKLVDCDTS
VAKNAYFTFTGTSNATQPKLIATVGSATNVGIRLQSASGEYLDNGAEQKGPVVLSNGTSVARFAAMYESTAASVTPGTAD
GVANFTVRYQ

Specific function: Fimbriae (also called pili), polar filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometers and numbering 100-300 per cell, enable bacteria to colonize the epithelium of specific host organs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1790769, Length=154, Percent_Identity=41.5584415584416, Blast_Score=88, Evalue=3e-19,
Organism=Escherichia coli, GI87082421, Length=150, Percent_Identity=32, Blast_Score=79, Evalue=1e-16,
Organism=Escherichia coli, GI87081804, Length=179, Percent_Identity=34.6368715083799, Blast_Score=77, Evalue=5e-16,
Organism=Escherichia coli, GI1789422, Length=185, Percent_Identity=33.5135135135135, Blast_Score=71, Evalue=3e-14,
Organism=Escherichia coli, GI87081753, Length=153, Percent_Identity=35.2941176470588, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1786746, Length=176, Percent_Identity=30.6818181818182, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 17220; Mature: 17220

Theoretical pI: Translated: 6.48; Mature: 6.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKALLSAVACAALSTSAFAAGTGTLNFTGEIVAGACGIDAGSVDQTVRLGFVPANTFKA
CCHHHHHHHHHHHHCCCCEECCCCEEEECCEEEEEECCCCCCCCCCEEEEEEEECCCEEC
AGDKSTPQNFDIKLVDCDTSVAKNAYFTFTGTSNATQPKLIATVGSATNVGIRLQSASGE
CCCCCCCCCCCEEEEECCCCHHCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC
YLDNGAEQKGPVVLSNGTSVARFAAMYESTAASVTPGTADGVANFTVRYQ
HHCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MKKALLSAVACAALSTSAFAAGTGTLNFTGEIVAGACGIDAGSVDQTVRLGFVPANTFKA
CCHHHHHHHHHHHHCCCCEECCCCEEEECCEEEEEECCCCCCCCCCEEEEEEEECCCEEC
AGDKSTPQNFDIKLVDCDTSVAKNAYFTFTGTSNATQPKLIATVGSATNVGIRLQSASGE
CCCCCCCCCCCEEEEECCCCHHCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC
YLDNGAEQKGPVVLSNGTSVARFAAMYESTAASVTPGTADGVANFTVRYQ
HHCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8636962; 11251843; 12657207 [H]