Click here to switch to the map view.

The map label for this gene is yfcU [H]

Identifier: 126452598

GI number: 126452598

Start: 1864298

End: 1866739

Strand: Direct

Name: yfcU [H]

Synonym: BURPS1106A_1910

Alternate gene names: 126452598

Gene position: 1864298-1866739 (Clockwise)

Preceding gene: 126453258

Following gene: 126451496

Centisome position: 46.74

GC content: 69.9

Gene sequence:

>2442_bases
GTGTTCATGCTGGCCGCCGGCAGCCATGCCCGGGCGACGGAGTTCAATGCGTCGTTCCTGAGCATCGACGGCAGGAACGA
CGTCGACCTGTCGCAGTTCGCGCAGGCGGACTACACGCTGCCGGGCACATACCTGCTCGACGTGCAGGTCAACGACGTGT
TCTTCGGCCTGCAGCCGATCGAATTCGTCGCGCACGACGACGGGCAGGGCGCGCGCGCGTGCGTCGCGCCCGAGCTCGTC
GCGCAGTTCGGGCTGAAGAAGTCGCTCGTCGAGAACCTGCCGCGCACGATGGGCGGCCGCTGCGCGGATCTCGCGTCGCT
CGACGGCGTGACGATCCGTTATCAGAAAGGCGAAGGGCGCCTGAAGATCACGATTGCGCAAGCCGCGCTCGAATTCGCCG
ATGCGTCGTACCTGCCGCCCGAGCGCTGGAGCGACGGCGTCGACGGCGCGATGCTCGACTATCGCGTGCTCGCGAACGCG
AACCACGCGTTCGGCCGCGGCGCGCAGCAGAACAATGCGGTGCAGGCGTACGGCACGATCGGCGCGAACTGGGGCGCGTG
GCGCTTTCGCGGCGATTATCAGGCGCAGACTCGCGCGGGCGGCGCCGTGTACGCGGAGCGCGCGTTCCGCTTCAACCAGC
TGTACGCGTATCGCGCGCTGCCGTCGATTCGCTCGACGCTGTCGTTCGGCGAGATCTACGTCGATTCGGACATCTTCAGC
ACGTTCTCGATGTCGGGCGTCGCGATGAAGAGCGACGACCGGATGCTGCCGCCTTCGATGCGCGGCTACGCGCCGCTCGT
CACGGGCGTCGCGCGCACCAACGCGATCGTCAAGGTGATGCAGGACAGCCGCGTGCTGTACATGACGAAGGTGTCGCCGG
GCGCGTTCGCGCTGTCGAACCTGAACACGAGCGTGCAGGGCACGCTCGACGTCGTCGTCGAGGAGGAGGACGGCACGGTG
CAGCGCTTCCAGGTCGCGACCGCGGCGGTGCCGTTTCTCGCGCGCGAGGGCCAACTGCGCTACAAGACCGCGATCGGCCA
GCCGCGCACCTTCGGCGGCGCGGGCATCACGCCGTGGTTCGGCTTCGCCGAGGCCGCGTACGGGCTGCCGTTCGACGTGA
CCGTCTACGGCGGCCTCATCGCGGCGTCCGGCTATACGTCGGTCGCGTTCGGCGTCGGCCGCGATTTCGGCCGTTTCGGC
GCGCTGTCGGCGGACGTGACGCACGCGCGCGCGACGCTCTGGTGGAACGGGCGGACGAAGCGCGGCAACTCGTATCGAAT
CAACTATTCGAAGCACGTCGACGCGCTCGACGCCGACGTGCGCTTCTTCGGCTATCGCTTCTCCGAGCGCGACTACACGA
ATTTCCAGCAGTTCTCGGGCGACCCGACCGCGTCGGGCCTCGCGAACGGCAAGCAGCGCTATTCGGCGATGCTCTCCAAG
CGCTTCGGCGATACGTCGACCTATTTCTCGTACGACCAGACGATCTACTGGGCGCGCCCGTCCGATCGGCGCATCGGCGT
GACGCTCACGCGCGCGTTCTCGCTCGGCGCGCTGAAGAGCGTGAACCTGGGTTTCTCCGCGTTCCGCACGCAAGGCGCGG
GCGGCGGCGGCAACCAGGTGTCGCTGACGGCGACGCTGCCGCTCGGCGAGCGCCAGACGCTCACGTCGAGCGTATCGGCG
GGCGAGGGCGGCACGAGCGTGAACGCGGGCTACCTCTACGATGGCGCGAACGGGCGCACCTATCAGCTGTACGGCGGCAC
GACCGACGGCCGCGCGTCGGCGAACGCGAGCTTGCGGCAGCGCACGCCGTCGTACCAGCTCACCGCGCAGGCGTCGACGG
TCGCGAACGCGTACGCGTCGGCGTCGCTCGAGGTCGACGGCTCGTTCGTCGCGACGCGCTACGGCGTGACCGCGCACGCG
AACGGCAACGCGGGCGACACGCGCCTGCTCGTGTCGACCGACGGCGTGCCCGGCGTGCCGCTGTCCGGCTCGTACGCCCG
CACGAATGCGCGCGGCTATGCGGTGATCGACGGCGTGTCGCCGTACAACGTGTACGACGCGACCGTGAGCGTCGAGAAGC
TCGGCCTCGACACCGACGTGACGAACCCGATTCAGCGCACCGTGCTCACCGACGGCGCGATCGGCTACATCCGGTTCAAC
GCGGCGCGCGGGCGCAACGTGTTCGTCACGCTGACGGGCGACGGCGGCGCGCCGGTGCCGTTCGGCGCGTCGGTGCAGGA
CGCCGCGACCGGCAAGGAGCTCGGCATCGTCGGCGAGGCGGGCGCCGCGTACCTGACGCAGGTGCAGCCGCGCGCGAAGC
TCGTCGTGCGCGCCGGCGCGAAGACGATCTGCACGCCCGCCGCGCTTCCCGACACGCTGCAGCTCGACGGCACGCCCGCG
CCGGTGGCCTGCGAAGCCGCCGCGCAGCACGCGTCGCGCTGA

Upstream 100 bases:

>100_bases
TCCTCGCGCGAATCCGCTTCGCGTTCCCGCTTTTTCCGCGATCCCCATCCCGTTACGGTTTCAGTCAGTCGGCGTGCGAA
TCAGACATTCCTTCCTCTGC

Downstream 100 bases:

>100_bases
GCGCGGCGCGCCGTCCCGCCCCTCGAATTCAAACCCGACCTAACCGACCTAACCGACCTAACCGACCTAACCGACCTAAC
CGACCTAACCGACCTAACCG

Product: fimbrial usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 813; Mature: 813

Protein sequence:

>813_residues
MFMLAAGSHARATEFNASFLSIDGRNDVDLSQFAQADYTLPGTYLLDVQVNDVFFGLQPIEFVAHDDGQGARACVAPELV
AQFGLKKSLVENLPRTMGGRCADLASLDGVTIRYQKGEGRLKITIAQAALEFADASYLPPERWSDGVDGAMLDYRVLANA
NHAFGRGAQQNNAVQAYGTIGANWGAWRFRGDYQAQTRAGGAVYAERAFRFNQLYAYRALPSIRSTLSFGEIYVDSDIFS
TFSMSGVAMKSDDRMLPPSMRGYAPLVTGVARTNAIVKVMQDSRVLYMTKVSPGAFALSNLNTSVQGTLDVVVEEEDGTV
QRFQVATAAVPFLAREGQLRYKTAIGQPRTFGGAGITPWFGFAEAAYGLPFDVTVYGGLIAASGYTSVAFGVGRDFGRFG
ALSADVTHARATLWWNGRTKRGNSYRINYSKHVDALDADVRFFGYRFSERDYTNFQQFSGDPTASGLANGKQRYSAMLSK
RFGDTSTYFSYDQTIYWARPSDRRIGVTLTRAFSLGALKSVNLGFSAFRTQGAGGGGNQVSLTATLPLGERQTLTSSVSA
GEGGTSVNAGYLYDGANGRTYQLYGGTTDGRASANASLRQRTPSYQLTAQASTVANAYASASLEVDGSFVATRYGVTAHA
NGNAGDTRLLVSTDGVPGVPLSGSYARTNARGYAVIDGVSPYNVYDATVSVEKLGLDTDVTNPIQRTVLTDGAIGYIRFN
AARGRNVFVTLTGDGGAPVPFGASVQDAATGKELGIVGEAGAAYLTQVQPRAKLVVRAGAKTICTPAALPDTLQLDGTPA
PVACEAAAQHASR

Sequences:

>Translated_813_residues
MFMLAAGSHARATEFNASFLSIDGRNDVDLSQFAQADYTLPGTYLLDVQVNDVFFGLQPIEFVAHDDGQGARACVAPELV
AQFGLKKSLVENLPRTMGGRCADLASLDGVTIRYQKGEGRLKITIAQAALEFADASYLPPERWSDGVDGAMLDYRVLANA
NHAFGRGAQQNNAVQAYGTIGANWGAWRFRGDYQAQTRAGGAVYAERAFRFNQLYAYRALPSIRSTLSFGEIYVDSDIFS
TFSMSGVAMKSDDRMLPPSMRGYAPLVTGVARTNAIVKVMQDSRVLYMTKVSPGAFALSNLNTSVQGTLDVVVEEEDGTV
QRFQVATAAVPFLAREGQLRYKTAIGQPRTFGGAGITPWFGFAEAAYGLPFDVTVYGGLIAASGYTSVAFGVGRDFGRFG
ALSADVTHARATLWWNGRTKRGNSYRINYSKHVDALDADVRFFGYRFSERDYTNFQQFSGDPTASGLANGKQRYSAMLSK
RFGDTSTYFSYDQTIYWARPSDRRIGVTLTRAFSLGALKSVNLGFSAFRTQGAGGGGNQVSLTATLPLGERQTLTSSVSA
GEGGTSVNAGYLYDGANGRTYQLYGGTTDGRASANASLRQRTPSYQLTAQASTVANAYASASLEVDGSFVATRYGVTAHA
NGNAGDTRLLVSTDGVPGVPLSGSYARTNARGYAVIDGVSPYNVYDATVSVEKLGLDTDVTNPIQRTVLTDGAIGYIRFN
AARGRNVFVTLTGDGGAPVPFGASVQDAATGKELGIVGEAGAAYLTQVQPRAKLVVRAGAKTICTPAALPDTLQLDGTPA
PVACEAAAQHASR
>Mature_813_residues
MFMLAAGSHARATEFNASFLSIDGRNDVDLSQFAQADYTLPGTYLLDVQVNDVFFGLQPIEFVAHDDGQGARACVAPELV
AQFGLKKSLVENLPRTMGGRCADLASLDGVTIRYQKGEGRLKITIAQAALEFADASYLPPERWSDGVDGAMLDYRVLANA
NHAFGRGAQQNNAVQAYGTIGANWGAWRFRGDYQAQTRAGGAVYAERAFRFNQLYAYRALPSIRSTLSFGEIYVDSDIFS
TFSMSGVAMKSDDRMLPPSMRGYAPLVTGVARTNAIVKVMQDSRVLYMTKVSPGAFALSNLNTSVQGTLDVVVEEEDGTV
QRFQVATAAVPFLAREGQLRYKTAIGQPRTFGGAGITPWFGFAEAAYGLPFDVTVYGGLIAASGYTSVAFGVGRDFGRFG
ALSADVTHARATLWWNGRTKRGNSYRINYSKHVDALDADVRFFGYRFSERDYTNFQQFSGDPTASGLANGKQRYSAMLSK
RFGDTSTYFSYDQTIYWARPSDRRIGVTLTRAFSLGALKSVNLGFSAFRTQGAGGGGNQVSLTATLPLGERQTLTSSVSA
GEGGTSVNAGYLYDGANGRTYQLYGGTTDGRASANASLRQRTPSYQLTAQASTVANAYASASLEVDGSFVATRYGVTAHA
NGNAGDTRLLVSTDGVPGVPLSGSYARTNARGYAVIDGVSPYNVYDATVSVEKLGLDTDVTNPIQRTVLTDGAIGYIRFN
AARGRNVFVTLTGDGGAPVPFGASVQDAATGKELGIVGEAGAAYLTQVQPRAKLVVRAGAKTICTPAALPDTLQLDGTPA
PVACEAAAQHASR

Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI87081778, Length=805, Percent_Identity=32.1739130434783, Blast_Score=370, Evalue=1e-103,
Organism=Escherichia coli, GI1786744, Length=821, Percent_Identity=29.1108404384896, Blast_Score=273, Evalue=2e-74,
Organism=Escherichia coli, GI1790772, Length=825, Percent_Identity=28, Blast_Score=265, Evalue=1e-71,
Organism=Escherichia coli, GI1787172, Length=837, Percent_Identity=27.479091995221, Blast_Score=259, Evalue=4e-70,
Organism=Escherichia coli, GI1786332, Length=821, Percent_Identity=27.1619975639464, Blast_Score=242, Evalue=7e-65,
Organism=Escherichia coli, GI1789533, Length=831, Percent_Identity=29.1215403128761, Blast_Score=240, Evalue=3e-64,
Organism=Escherichia coli, GI1788427, Length=830, Percent_Identity=25.3012048192771, Blast_Score=185, Evalue=9e-48,
Organism=Escherichia coli, GI1789610, Length=786, Percent_Identity=21.3740458015267, Blast_Score=82, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 86583; Mature: 86583

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMLAAGSHARATEFNASFLSIDGRNDVDLSQFAQADYTLPGTYLLDVQVNDVFFGLQPI
CEEEECCCCCCEEECCCEEEEECCCCCCCHHHHHCCCCCCCCEEEEEEEECCEEECCCCE
EFVAHDDGQGARACVAPELVAQFGLKKSLVENLPRTMGGRCADLASLDGVTIRYQKGEGR
EEEEECCCCCCEEEHHHHHHHHHCHHHHHHHHHHHHHCCCEEHHHCCCCEEEEEECCCCE
LKITIAQAALEFADASYLPPERWSDGVDGAMLDYRVLANANHAFGRGAQQNNAVQAYGTI
EEEEEEHHHHHHHCCCCCCHHHCCCCCCCCEEEEEEEECCCHHHCCCCCCCCCEEEEEEE
GANWGAWRFRGDYQAQTRAGGAVYAERAFRFNQLYAYRALPSIRSTLSFGEIYVDSDIFS
CCCCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHCHHHHHHHCCCEEEECCHHHH
TFSMSGVAMKSDDRMLPPSMRGYAPLVTGVARTNAIVKVMQDSRVLYMTKVSPGAFALSN
HHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHEEEEECCCEEEEEEECCCCEEEEEC
LNTSVQGTLDVVVEEEDGTVQRFQVATAAVPFLAREGQLRYKTAIGQPRTFGGAGITPWF
CCCCCCEEEEEEEECCCCCEEEEEEHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
GFAEAAYGLPFDVTVYGGLIAASGYTSVAFGVGRDFGRFGALSADVTHARATLWWNGRTK
CHHHHHCCCCEEEEEECCEEEECCCCEEEEECCCCCHHHCCCCCCCCEEEEEEEECCCCC
RGNSYRINYSKHVDALDADVRFFGYRFSERDYTNFQQFSGDPTASGLANGKQRYSAMLSK
CCCEEEEEHHHCCCCCCCCEEEEEEEECCCCCCCHHHHCCCCCHHHHCCHHHHHHHHHHH
RFGDTSTYFSYDQTIYWARPSDRRIGVTLTRAFSLGALKSVNLGFSAFRTQGAGGGGNQV
HCCCCCEEEEECCEEEEECCCCCEEEEEEEEEECCCCEEECCCCHHHHEECCCCCCCCEE
SLTATLPLGERQTLTSSVSAGEGGTSVNAGYLYDGANGRTYQLYGGTTDGRASANASLRQ
EEEEEECCCCCHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCHHHH
RTPSYQLTAQASTVANAYASASLEVDGSFVATRYGVTAHANGNAGDTRLLVSTDGVPGVP
CCCCEEEEECHHHHHHHHHEEEEEECCCEEEEEECEEEECCCCCCCEEEEEECCCCCCCC
LSGSYARTNARGYAVIDGVSPYNVYDATVSVEKLGLDTDVTNPIQRTVLTDGAIGYIRFN
CCCCCEECCCCCEEEEECCCCCEEEEEEEEEEHCCCCCCCCCHHHHHEECCCCEEEEEEE
AARGRNVFVTLTGDGGAPVPFGASVQDAATGKELGIVGEAGAAYLTQVQPRAKLVVRAGA
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEHEECCCCCEEEEECCC
KTICTPAALPDTLQLDGTPAPVACEAAAQHASR
CCEECCCCCCCCEEECCCCCCEEHHHHHHHCCC
>Mature Secondary Structure
MFMLAAGSHARATEFNASFLSIDGRNDVDLSQFAQADYTLPGTYLLDVQVNDVFFGLQPI
CEEEECCCCCCEEECCCEEEEECCCCCCCHHHHHCCCCCCCCEEEEEEEECCEEECCCCE
EFVAHDDGQGARACVAPELVAQFGLKKSLVENLPRTMGGRCADLASLDGVTIRYQKGEGR
EEEEECCCCCCEEEHHHHHHHHHCHHHHHHHHHHHHHCCCEEHHHCCCCEEEEEECCCCE
LKITIAQAALEFADASYLPPERWSDGVDGAMLDYRVLANANHAFGRGAQQNNAVQAYGTI
EEEEEEHHHHHHHCCCCCCHHHCCCCCCCCEEEEEEEECCCHHHCCCCCCCCCEEEEEEE
GANWGAWRFRGDYQAQTRAGGAVYAERAFRFNQLYAYRALPSIRSTLSFGEIYVDSDIFS
CCCCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHCHHHHHHHCCCEEEECCHHHH
TFSMSGVAMKSDDRMLPPSMRGYAPLVTGVARTNAIVKVMQDSRVLYMTKVSPGAFALSN
HHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHEEEEECCCEEEEEEECCCCEEEEEC
LNTSVQGTLDVVVEEEDGTVQRFQVATAAVPFLAREGQLRYKTAIGQPRTFGGAGITPWF
CCCCCCEEEEEEEECCCCCEEEEEEHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
GFAEAAYGLPFDVTVYGGLIAASGYTSVAFGVGRDFGRFGALSADVTHARATLWWNGRTK
CHHHHHCCCCEEEEEECCEEEECCCCEEEEECCCCCHHHCCCCCCCCEEEEEEEECCCCC
RGNSYRINYSKHVDALDADVRFFGYRFSERDYTNFQQFSGDPTASGLANGKQRYSAMLSK
CCCEEEEEHHHCCCCCCCCEEEEEEEECCCCCCCHHHHCCCCCHHHHCCHHHHHHHHHHH
RFGDTSTYFSYDQTIYWARPSDRRIGVTLTRAFSLGALKSVNLGFSAFRTQGAGGGGNQV
HCCCCCEEEEECCEEEEECCCCCEEEEEEEEEECCCCEEECCCCHHHHEECCCCCCCCEE
SLTATLPLGERQTLTSSVSAGEGGTSVNAGYLYDGANGRTYQLYGGTTDGRASANASLRQ
EEEEEECCCCCHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCHHHH
RTPSYQLTAQASTVANAYASASLEVDGSFVATRYGVTAHANGNAGDTRLLVSTDGVPGVP
CCCCEEEEECHHHHHHHHHEEEEEECCCEEEEEECEEEECCCCCCCEEEEEECCCCCCCC
LSGSYARTNARGYAVIDGVSPYNVYDATVSVEKLGLDTDVTNPIQRTVLTDGAIGYIRFN
CCCCCEECCCCCEEEEECCCCCEEEEEEEEEEHCCCCCCCCCHHHHHEECCCCEEEEEEE
AARGRNVFVTLTGDGGAPVPFGASVQDAATGKELGIVGEAGAAYLTQVQPRAKLVVRAGA
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEHEECCCCCEEEEECCC
KTICTPAALPDTLQLDGTPAPVACEAAAQHASR
CCEECCCCCCCCEEECCCCCCEEHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]