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The map label for this gene is gspE [C]

Identifier: 126452852

GI number: 126452852

Start: 1844111

End: 1845682

Strand: Direct

Name: gspE [C]

Synonym: BURPS1106A_1888

Alternate gene names: 126452852

Gene position: 1844111-1845682 (Clockwise)

Preceding gene: 126453450

Following gene: 126452248

Centisome position: 46.24

GC content: 71.18

Gene sequence:

>1572_bases
ATGTTCGGCCGGCGTCCGGCCGCTTCATTCGCGCCCGGCGACGCCGGCGGCGCGCACGAGTTCGCGCCCGACGCCGCGCC
GGCGGGCGCGGGTGCGGCGCCGGCCGGCGGCCACGCATCGGCGCCCGACGCGGGCGGCGCGGCACGCGCGCGCGAGCCGG
CCGGCGCATCGGGCGCGAGCGCGCCCGGCGGGGCGCCGCAGTCCGGCGTCGCGCCAAGCGGCCATCGGCCCGCATCGCGT
GACGACCGCATCGACCGCATCGATCGCGATGACGGCCACGACCGCGCGCCCGCGCAAGACCACCACGAGGCGCTGATCCG
CTCGGAGACGTTCAAGACGATCCGCGCGGTCGTGTTCTCGTCGATGAACATGTCGGCCGCGCTGATGATGTCGCGCGCCG
AAGTGCGCGAAGGCATCGAGCAGGCGGCCGCCGACGTGATCGCGCGCGAGCGGCTGACGGTGACGCTCGCCGAGCAGACG
CTCATCGTCGACGAGATCCTCAACGACATGTTCGGCGTCGGGCCGATCGAGCCGTTGCTCGCCGACGAACGCGTGACCGA
CATCCTCGTCAACGGCCCCGATCAGGTGTACGTCGAGCGCGCCGGCAAGCTCGAGCTCACGCCGCTGAAGTTCCGCGACA
ACGCGCACGTGATCAACGTCGCGCAGCGGATCGCGGCGGCGGTCGGGCGGCGCGTCGACGAGAGCAGCCCGATGGTCGAC
GCGCGGCTCGCGGACGGCAGCCGCGTGAACGTCGTGCTGCCGCCGATCGCGATCCGCGGCGCGTCGATCTCGATCCGCAA
GTTCGCCAAGCGCAACATCACGCTCGCGCGGATGGCGCAGCAGGGCAACCTGTCGCAGGCGATGGTCGAGGTGCTGAAGA
TCGCGAGCGCGTGCCGGCTGAACATCGTGATCTCGGGCGGCACGGGCTCCGGCAAGACGACGCTGCTGAACGCGCTGTCG
CACTTCATCGATTCGCACGAGCGCATCGTGACGATCGAGGACGCCGCGGAGCTGCAATTGCAGCAGCCGCACGTCGTGAG
CCTCGAGACGCGCCCGGAGAACAGCGAGGGGCTGGGCGGCGTGTCGCAGCGCGATCTCGTGCGCAACGCGCTGCGCATGC
GCCCCGATCGCATCATCCTCGGCGAGACGCGCGGCCCGGAGGCGTTCGACGTGCTGCAGGCGATGAACACCGGGCACGAC
GGCTCGATGACGACGATCCACGCGAACACGCCGCGCGATGCGATCACGCGCCTCGAGAGCATGGTGATGATGGCCAACGG
CAACCTGCCGCTCGTGTCGATCCGCCGGCAGATCGCGAGCGCGGTGCACATGATCCTGCAGATCGAGCGCATGCGCGACG
GCGTGCGGCGCGTCACGCGCGTGACCGAGATCGCCGGCATGGAGGGCGATGTCGTGATCACGCAGGATCTGTTCGCGTTC
CGCTACGACGCGAGCGCGTTCCAGGAGCAGGTGCACGGAATGTTCGAATCGTCGTCGCTGCGCCCGGCGTTCGCGCAGCG
CGCCGCGTATTACGGCCTCGAGGGCGCGCTGCTCGGCGCGTTGCAGCCGTGA

Upstream 100 bases:

>100_bases
GCATCGGCGCGCTCGCGCAGGGGCTCACGGGCGCCGACGCGGCGCCCGCCGCGCGTCGGCCGTGGTACGCGCGGCTCGCC
GGCGCGCGGGGGGCGCGGTG

Downstream 100 bases:

>100_bases
GCGCGGCGGACGTCGTTGCCGTCGGCGCGTTTTTCGCGATCGTCGTCGCGGGCTTCATCGTGCGCGCGCTGCGCGATCTC
GCGCGGCGGCGGCCCGCCGC

Product: type IV pilus assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MFGRRPAASFAPGDAGGAHEFAPDAAPAGAGAAPAGGHASAPDAGGAARAREPAGASGASAPGGAPQSGVAPSGHRPASR
DDRIDRIDRDDGHDRAPAQDHHEALIRSETFKTIRAVVFSSMNMSAALMMSRAEVREGIEQAAADVIARERLTVTLAEQT
LIVDEILNDMFGVGPIEPLLADERVTDILVNGPDQVYVERAGKLELTPLKFRDNAHVINVAQRIAAAVGRRVDESSPMVD
ARLADGSRVNVVLPPIAIRGASISIRKFAKRNITLARMAQQGNLSQAMVEVLKIASACRLNIVISGGTGSGKTTLLNALS
HFIDSHERIVTIEDAAELQLQQPHVVSLETRPENSEGLGGVSQRDLVRNALRMRPDRIILGETRGPEAFDVLQAMNTGHD
GSMTTIHANTPRDAITRLESMVMMANGNLPLVSIRRQIASAVHMILQIERMRDGVRRVTRVTEIAGMEGDVVITQDLFAF
RYDASAFQEQVHGMFESSSLRPAFAQRAAYYGLEGALLGALQP

Sequences:

>Translated_523_residues
MFGRRPAASFAPGDAGGAHEFAPDAAPAGAGAAPAGGHASAPDAGGAARAREPAGASGASAPGGAPQSGVAPSGHRPASR
DDRIDRIDRDDGHDRAPAQDHHEALIRSETFKTIRAVVFSSMNMSAALMMSRAEVREGIEQAAADVIARERLTVTLAEQT
LIVDEILNDMFGVGPIEPLLADERVTDILVNGPDQVYVERAGKLELTPLKFRDNAHVINVAQRIAAAVGRRVDESSPMVD
ARLADGSRVNVVLPPIAIRGASISIRKFAKRNITLARMAQQGNLSQAMVEVLKIASACRLNIVISGGTGSGKTTLLNALS
HFIDSHERIVTIEDAAELQLQQPHVVSLETRPENSEGLGGVSQRDLVRNALRMRPDRIILGETRGPEAFDVLQAMNTGHD
GSMTTIHANTPRDAITRLESMVMMANGNLPLVSIRRQIASAVHMILQIERMRDGVRRVTRVTEIAGMEGDVVITQDLFAF
RYDASAFQEQVHGMFESSSLRPAFAQRAAYYGLEGALLGALQP
>Mature_523_residues
MFGRRPAASFAPGDAGGAHEFAPDAAPAGAGAAPAGGHASAPDAGGAARAREPAGASGASAPGGAPQSGVAPSGHRPASR
DDRIDRIDRDDGHDRAPAQDHHEALIRSETFKTIRAVVFSSMNMSAALMMSRAEVREGIEQAAADVIARERLTVTLAEQT
LIVDEILNDMFGVGPIEPLLADERVTDILVNGPDQVYVERAGKLELTPLKFRDNAHVINVAQRIAAAVGRRVDESSPMVD
ARLADGSRVNVVLPPIAIRGASISIRKFAKRNITLARMAQQGNLSQAMVEVLKIASACRLNIVISGGTGSGKTTLLNALS
HFIDSHERIVTIEDAAELQLQQPHVVSLETRPENSEGLGGVSQRDLVRNALRMRPDRIILGETRGPEAFDVLQAMNTGHD
GSMTTIHANTPRDAITRLESMVMMANGNLPLVSIRRQIASAVHMILQIERMRDGVRRVTRVTEIAGMEGDVVITQDLFAF
RYDASAFQEQVHGMFESSSLRPAFAQRAAYYGLEGALLGALQP

Specific function: Involved In A General Secretion Pathway (Gsp) For The Export Of Proteins (By Similarity). [C]

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 55838; Mature: 55838

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGRRPAASFAPGDAGGAHEFAPDAAPAGAGAAPAGGHASAPDAGGAARAREPAGASGAS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APGGAPQSGVAPSGHRPASRDDRIDRIDRDDGHDRAPAQDHHEALIRSETFKTIRAVVFS
CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SMNMSAALMMSRAEVREGIEQAAADVIARERLTVTLAEQTLIVDEILNDMFGVGPIEPLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHCCCCCCCHHH
ADERVTDILVNGPDQVYVERAGKLELTPLKFRDNAHVINVAQRIAAAVGRRVDESSPMVD
HCCHHHEEEECCCCEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEE
ARLADGSRVNVVLPPIAIRGASISIRKFAKRNITLARMAQQGNLSQAMVEVLKIASACRL
EEECCCCEEEEEECCEEECCCCCHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHCCEEE
NIVISGGTGSGKTTLLNALSHFIDSHERIVTIEDAAELQLQQPHVVSLETRPENSEGLGG
EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHHEECCCCEEEEECCCCCCCCCCC
VSQRDLVRNALRMRPDRIILGETRGPEAFDVLQAMNTGHDGSMTTIHANTPRDAITRLES
CHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
MVMMANGNLPLVSIRRQIASAVHMILQIERMRDGVRRVTRVTEIAGMEGDVVITQDLFAF
HHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH
RYDASAFQEQVHGMFESSSLRPAFAQRAAYYGLEGALLGALQP
HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHCCCCC
>Mature Secondary Structure
MFGRRPAASFAPGDAGGAHEFAPDAAPAGAGAAPAGGHASAPDAGGAARAREPAGASGAS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APGGAPQSGVAPSGHRPASRDDRIDRIDRDDGHDRAPAQDHHEALIRSETFKTIRAVVFS
CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SMNMSAALMMSRAEVREGIEQAAADVIARERLTVTLAEQTLIVDEILNDMFGVGPIEPLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHCCCCCCCHHH
ADERVTDILVNGPDQVYVERAGKLELTPLKFRDNAHVINVAQRIAAAVGRRVDESSPMVD
HCCHHHEEEECCCCEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEE
ARLADGSRVNVVLPPIAIRGASISIRKFAKRNITLARMAQQGNLSQAMVEVLKIASACRL
EEECCCCEEEEEECCEEECCCCCHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHCCEEE
NIVISGGTGSGKTTLLNALSHFIDSHERIVTIEDAAELQLQQPHVVSLETRPENSEGLGG
EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHHEECCCCEEEEECCCCCCCCCCC
VSQRDLVRNALRMRPDRIILGETRGPEAFDVLQAMNTGHDGSMTTIHANTPRDAITRLES
CHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
MVMMANGNLPLVSIRRQIASAVHMILQIERMRDGVRRVTRVTEIAGMEGDVVITQDLFAF
HHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH
RYDASAFQEQVHGMFESSSLRPAFAQRAAYYGLEGALLGALQP
HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]