| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is 126452832
Identifier: 126452832
GI number: 126452832
Start: 3220915
End: 3221601
Strand: Direct
Name: 126452832
Synonym: BURPS1106A_3303
Alternate gene names: NA
Gene position: 3220915-3221601 (Clockwise)
Preceding gene: 126454849
Following gene: 126452950
Centisome position: 80.76
GC content: 64.34
Gene sequence:
>687_bases ATGACTAATCTGGCACTTTTCGATCTGGATCACACGCTGATCCCCACCGATAGCGATCACGAGTGGGGCCGCTTCATGGT CCGGCTCGGCATCGTCGACGCGGACAGCTTCTCGCGTCAGAACGACCGCTTCTACGCCGACTACAAGGCCGGCAAGCTCG ACATCCACGCGTACCTGAGCGCGATGCTCACGCCGCTCGCGAAGTATTCGCGCGCGCAGCTCGCGCAGTGGCACGACCGG TACATGCACGAAGTGATCCGGCCGGCGATGCTGCCCGCCGCGATCGAGCTCGTGCGCCGGCATCAGGACGCGGGCGACCT CTGCTGCATCGTCACCGCGACGAACGAATTCATCACGCGTCCGATCGCGACCGCGTTCGGCGTCGACACGCTGATCGCCT GCGAAGTGGAAACCGTCGACGGCCATCCCGATTCCGCGTTCACCGGCCGCCCGACGGGCACGCCGAGCTACCGCGAAGGC AAGATCACCCGCACGCAGGCGTGGCTCGCATCGCTCGGCAAGCGCTGGGACGATTTCGACCGCAGCTATTTCTACAGCGA TTCGCACAACGACATTCCACTCCTCGAAAAAGTCACCGACCCGATCGCGACCAATCCCGACGACACGCTGCGCGCATACG CACGCGAGCACGGCTGGCGCATCCTCGACCTCTTCCAACCGTCGTGA
Upstream 100 bases:
>100_bases CGCGGTGACGCTGCCGCTGCTGCGCGCGATGCTGGCCGCGCCGGAACGCGAGGAGCCCGCGCCGGGCCGGTTCAAGTAGC TTCAAGTAAAATGCGCATCC
Downstream 100 bases:
>100_bases TCAAAAAACTCATCCGCAAGCTGCTCGGGCAGGACGCCCGTACGGCGCAAGACGCGCCGCAGGACCCGGCCGAGCCGCGC TCGGCCGCGCCCGCCGCCCC
Product: HAD-superfamily subfamily IB hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 228; Mature: 227
Protein sequence:
>228_residues MTNLALFDLDHTLIPTDSDHEWGRFMVRLGIVDADSFSRQNDRFYADYKAGKLDIHAYLSAMLTPLAKYSRAQLAQWHDR YMHEVIRPAMLPAAIELVRRHQDAGDLCCIVTATNEFITRPIATAFGVDTLIACEVETVDGHPDSAFTGRPTGTPSYREG KITRTQAWLASLGKRWDDFDRSYFYSDSHNDIPLLEKVTDPIATNPDDTLRAYAREHGWRILDLFQPS
Sequences:
>Translated_228_residues MTNLALFDLDHTLIPTDSDHEWGRFMVRLGIVDADSFSRQNDRFYADYKAGKLDIHAYLSAMLTPLAKYSRAQLAQWHDR YMHEVIRPAMLPAAIELVRRHQDAGDLCCIVTATNEFITRPIATAFGVDTLIACEVETVDGHPDSAFTGRPTGTPSYREG KITRTQAWLASLGKRWDDFDRSYFYSDSHNDIPLLEKVTDPIATNPDDTLRAYAREHGWRILDLFQPS >Mature_227_residues TNLALFDLDHTLIPTDSDHEWGRFMVRLGIVDADSFSRQNDRFYADYKAGKLDIHAYLSAMLTPLAKYSRAQLAQWHDRY MHEVIRPAMLPAAIELVRRHQDAGDLCCIVTATNEFITRPIATAFGVDTLIACEVETVDGHPDSAFTGRPTGTPSYREGK ITRTQAWLASLGKRWDDFDRSYFYSDSHNDIPLLEKVTDPIATNPDDTLRAYAREHGWRILDLFQPS
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR006385 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25965; Mature: 25834
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNLALFDLDHTLIPTDSDHEWGRFMVRLGIVDADSFSRQNDRFYADYKAGKLDIHAYLS CCCEEEEECCCEECCCCCCCHHHEEEEEEEEEECCCCCCCCCCEEEECCCCCCHHHHHHH AMLTPLAKYSRAQLAQWHDRYMHEVIRPAMLPAAIELVRRHQDAGDLCCIVTATNEFITR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHH PIATAFGVDTLIACEVETVDGHPDSAFTGRPTGTPSYREGKITRTQAWLASLGKRWDDFD HHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHC RSYFYSDSHNDIPLLEKVTDPIATNPDDTLRAYAREHGWRILDLFQPS CCEEECCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCC >Mature Secondary Structure TNLALFDLDHTLIPTDSDHEWGRFMVRLGIVDADSFSRQNDRFYADYKAGKLDIHAYLS CCEEEEECCCEECCCCCCCHHHEEEEEEEEEECCCCCCCCCCEEEECCCCCCHHHHHHH AMLTPLAKYSRAQLAQWHDRYMHEVIRPAMLPAAIELVRRHQDAGDLCCIVTATNEFITR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHH PIATAFGVDTLIACEVETVDGHPDSAFTGRPTGTPSYREGKITRTQAWLASLGKRWDDFD HHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHC RSYFYSDSHNDIPLLEKVTDPIATNPDDTLRAYAREHGWRILDLFQPS CCEEECCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA