Click here to switch to the map view.

The map label for this gene is yajR [H]

Identifier: 126452737

GI number: 126452737

Start: 580476

End: 581633

Strand: Direct

Name: yajR [H]

Synonym: BURPS1106A_0610

Alternate gene names: 126452737

Gene position: 580476-581633 (Clockwise)

Preceding gene: 126452460

Following gene: 126453998

Centisome position: 14.55

GC content: 66.15

Gene sequence:

>1158_bases
ATGAGCGCGCCCGAGCTGCGCGCGACCACGTCGCTCGCGGCGATCTTCGCGCTGCGCATGCTCGGCCTGTTCATGATCAT
GCCGGTGTTCTCCGTCTACGCGAAGACGATTCCCGGCGGCGAGAACGTCGTGCTCGTCGGCATCGCGCTCGGCGCTTACG
GCGTCACGCAATCGCTCCTTTACATCTTCTACGGCTGGGCATCGGACAAGTTCGGGCGCAAGCCGGTGATCGCCGCGGGC
CTGCTGATCTTCGCGCTCGGCAGCTTCGTCGCGGCGTTCGCGCACGACATCACGTGGATCATCGTCGGCCGGGTCATCCA
GGGAATGGGGGCGGTATCGTCGGCGGTGCTCGCGTTCATCGCCGATCTGACCTCCGAGCACAACCGGACCAAGGCGATGG
CGATGGTGGGCGGCTCGATCGGCATGTCGTTCGCGGTGGCGATCGTCGGCGCGCCGATCGTGTTCCACTGGGTGGGGATG
AGCGGGCTCTTCGCGATCGTCGGCGCGCTGTCGGTGGCCGCGATCGGCGTCGTGCTGTGGGTCGTGCCCGACGCGCCGCG
GCCCGTGCACGTGCCCGCGCCGTTCGCCGAAGTGCTGCACAACGTCGAGCTGCTGCGCCTGAACTTCGGCGTGCTCGTGC
TGCATGCGACGCAAACCGCGCTTTTTCTCGTCGTGCCGCGCCTGCTCGTGGACGGCGGGCTGCCCGTCGCGTCGCACTGG
CAGGTTTATCTGCCGGTGATGGGGCTCGCGTTCGTGATGATGGTGCCGGCCATCATCGTCGCGGAAAAGCAGGGCAGGAT
GAAGCCCGTGCTATTGGGCGGAATTGCGGCTATCCTGATCGGCCAGCTGTTGCTCGGCGTGGCAACGCATACGATATTGA
TTGTCGCGGCAATTCTGTTCGTCTACTTCCTGGGCTTCAACATTCTGGAGGCGTCGCAGCCGTCGCTCGTGTCGAAGCTC
GCGCCCGGTTCTCGCAAGGGCGCGGCCACGGGCGTCTATAACACGACGCAATCGATCGGGCTCGCGCTCGGCGGCGTCGT
GGGCGGCGTGCTGCTGAAGCACGGCGGCCCGGACACGGTGTTTTTCGCGTGTTCGGCACTCGTAGCCGTGTGGCTTATAA
TCGCGGCCGGCATGAAACAGCCGCCGCGCAAAGCCTGA

Upstream 100 bases:

>100_bases
AGGCGGCCGGCCCCGGATCTTCCGCCGCCCGGCAGCGGGCGGACCACCGATTCAATCGAACACACGCCCGATGTCCAATC
CGTCCGCTACCTCCACTCGC

Downstream 100 bases:

>100_bases
CACGCGAACGCCCTTCGAAGCGCGCGGCGTGCTCCGGTCCGGCACACGCCGGGCCGATGAAGCCCTGAACGGTTTTGCCG
CGCTGTTTGGCATCGAATCA

Product: major facilitator family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MSAPELRATTSLAAIFALRMLGLFMIMPVFSVYAKTIPGGENVVLVGIALGAYGVTQSLLYIFYGWASDKFGRKPVIAAG
LLIFALGSFVAAFAHDITWIIVGRVIQGMGAVSSAVLAFIADLTSEHNRTKAMAMVGGSIGMSFAVAIVGAPIVFHWVGM
SGLFAIVGALSVAAIGVVLWVVPDAPRPVHVPAPFAEVLHNVELLRLNFGVLVLHATQTALFLVVPRLLVDGGLPVASHW
QVYLPVMGLAFVMMVPAIIVAEKQGRMKPVLLGGIAAILIGQLLLGVATHTILIVAAILFVYFLGFNILEASQPSLVSKL
APGSRKGAATGVYNTTQSIGLALGGVVGGVLLKHGGPDTVFFACSALVAVWLIIAAGMKQPPRKA

Sequences:

>Translated_385_residues
MSAPELRATTSLAAIFALRMLGLFMIMPVFSVYAKTIPGGENVVLVGIALGAYGVTQSLLYIFYGWASDKFGRKPVIAAG
LLIFALGSFVAAFAHDITWIIVGRVIQGMGAVSSAVLAFIADLTSEHNRTKAMAMVGGSIGMSFAVAIVGAPIVFHWVGM
SGLFAIVGALSVAAIGVVLWVVPDAPRPVHVPAPFAEVLHNVELLRLNFGVLVLHATQTALFLVVPRLLVDGGLPVASHW
QVYLPVMGLAFVMMVPAIIVAEKQGRMKPVLLGGIAAILIGQLLLGVATHTILIVAAILFVYFLGFNILEASQPSLVSKL
APGSRKGAATGVYNTTQSIGLALGGVVGGVLLKHGGPDTVFFACSALVAVWLIIAAGMKQPPRKA
>Mature_384_residues
SAPELRATTSLAAIFALRMLGLFMIMPVFSVYAKTIPGGENVVLVGIALGAYGVTQSLLYIFYGWASDKFGRKPVIAAGL
LIFALGSFVAAFAHDITWIIVGRVIQGMGAVSSAVLAFIADLTSEHNRTKAMAMVGGSIGMSFAVAIVGAPIVFHWVGMS
GLFAIVGALSVAAIGVVLWVVPDAPRPVHVPAPFAEVLHNVELLRLNFGVLVLHATQTALFLVVPRLLVDGGLPVASHWQ
VYLPVMGLAFVMMVPAIIVAEKQGRMKPVLLGGIAAILIGQLLLGVATHTILIVAAILFVYFLGFNILEASQPSLVSKLA
PGSRKGAATGVYNTTQSIGLALGGVVGGVLLKHGGPDTVFFACSALVAVWLIIAAGMKQPPRKA

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081738, Length=388, Percent_Identity=42.2680412371134, Blast_Score=300, Evalue=8e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40137; Mature: 40006

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPELRATTSLAAIFALRMLGLFMIMPVFSVYAKTIPGGENVVLVGIALGAYGVTQSLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHH
YIFYGWASDKFGRKPVIAAGLLIFALGSFVAAFAHDITWIIVGRVIQGMGAVSSAVLAFI
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADLTSEHNRTKAMAMVGGSIGMSFAVAIVGAPIVFHWVGMSGLFAIVGALSVAAIGVVLW
HHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
VVPDAPRPVHVPAPFAEVLHNVELLRLNFGVLVLHATQTALFLVVPRLLVDGGLPVASHW
EECCCCCCCCCCCCHHHHHCCHHEEEEECCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCH
QVYLPVMGLAFVMMVPAIIVAEKQGRMKPVLLGGIAAILIGQLLLGVATHTILIVAAILF
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VYFLGFNILEASQPSLVSKLAPGSRKGAATGVYNTTQSIGLALGGVVGGVLLKHGGPDTV
HHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
FFACSALVAVWLIIAAGMKQPPRKA
HHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SAPELRATTSLAAIFALRMLGLFMIMPVFSVYAKTIPGGENVVLVGIALGAYGVTQSLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHH
YIFYGWASDKFGRKPVIAAGLLIFALGSFVAAFAHDITWIIVGRVIQGMGAVSSAVLAFI
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADLTSEHNRTKAMAMVGGSIGMSFAVAIVGAPIVFHWVGMSGLFAIVGALSVAAIGVVLW
HHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
VVPDAPRPVHVPAPFAEVLHNVELLRLNFGVLVLHATQTALFLVVPRLLVDGGLPVASHW
EECCCCCCCCCCCCHHHHHCCHHEEEEECCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCH
QVYLPVMGLAFVMMVPAIIVAEKQGRMKPVLLGGIAAILIGQLLLGVATHTILIVAAILF
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VYFLGFNILEASQPSLVSKLAPGSRKGAATGVYNTTQSIGLALGGVVGGVLLKHGGPDTV
HHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
FFACSALVAVWLIIAAGMKQPPRKA
HHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]