Click here to switch to the map view.

The map label for this gene is qseB [H]

Identifier: 126452671

GI number: 126452671

Start: 831410

End: 832072

Strand: Direct

Name: qseB [H]

Synonym: BURPS1106A_0850

Alternate gene names: 126452671

Gene position: 831410-832072 (Clockwise)

Preceding gene: 126453889

Following gene: 126451567

Centisome position: 20.85

GC content: 69.83

Gene sequence:

>663_bases
ATGCGGATATTGCTGGTTGAAGACGATCGGATGATCGCCGAAGGCGTGCGCAAGGCGCTGAAGGCCGACGGCTGCGCGGT
CGACTGGGTGCAGGACGGCGACGCGGCGCTCACCGCGCTCGGCGGCGAGGCGTACGATCTGCTGCTGCTCGATCTCGGGC
TGCCCAAGCGCGACGGCATCGACGTGCTGCGCACGCTGCGCGCGCGCGGGCTCGCGCTGCCGGTGCTGATCCTCACCGCG
CGCGATGCGGTCGCCGATCGCGTGAAGGGCCTCGACGCGGGCGCCGACGACTATCTCGTCAAGCCGTTCGATCTCGACGA
GCTCGCCGCGCGGATGCGCGCGCTGATCCGCCGCCAGTCGGGGCGCAGCGAATCGATGATCCGGCACGGCGCGCTGACGC
TCGATCCGGCGTCGCATCAGGTGACGCTCGACGGGGCGCCCGTCGCGCTGTCGGCGCGCGAGTTCGCGCTGCTCGAAGCG
CTGCTCGCGCGTCCGGGCGCGGTGCTGTCGAAGAGCCAGCTCGAGGAGAAGATGTACGGCTGGGGCGAGGAGATCGGCAG
CAACACCGTCGAGGTCTATATCCACGCGCTGCGCAAGAAGCTCGGCTCGGACCTGATCCGCAACGTCCGCGGCCTCGGCT
ACATGGTCGTGAAGGAAGCGTAG

Upstream 100 bases:

>100_bases
GGCGCGCGAGCAGCGCCGAAATCGCCCGAAGGTCCGTTCCCGCGCGCGGCGGCGCTACAATGTCCGCCATCTCGAACGCA
TGCGACGGACGTTTTTCAGG

Downstream 100 bases:

>100_bases
CGCGTGAGGTCGATTCGCCATCAATTGCTGATCTGGCTGCTCGCGATCGTCGTGGCCGGCGTGGGGCTCGCCGGCTGGAT
GATCTACCGGCAGGCGCTTG

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MRILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGIDVLRTLRARGLALPVLILTA
RDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEA
LLARPGAVLSKSQLEEKMYGWGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKEA

Sequences:

>Translated_220_residues
MRILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGIDVLRTLRARGLALPVLILTA
RDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEA
LLARPGAVLSKSQLEEKMYGWGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKEA
>Mature_220_residues
MRILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGIDVLRTLRARGLALPVLILTA
RDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEA
LLARPGAVLSKSQLEEKMYGWGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKEA

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=216, Percent_Identity=52.7777777777778, Blast_Score=226, Evalue=1e-60,
Organism=Escherichia coli, GI1790552, Length=217, Percent_Identity=46.0829493087558, Blast_Score=191, Evalue=2e-50,
Organism=Escherichia coli, GI87082012, Length=221, Percent_Identity=39.8190045248869, Blast_Score=150, Evalue=5e-38,
Organism=Escherichia coli, GI1786784, Length=222, Percent_Identity=39.1891891891892, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1787375, Length=219, Percent_Identity=35.6164383561644, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=39.5454545454545, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI1790860, Length=219, Percent_Identity=38.3561643835616, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1786911, Length=219, Percent_Identity=36.986301369863, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789809, Length=230, Percent_Identity=32.6086956521739, Blast_Score=123, Evalue=9e-30,
Organism=Escherichia coli, GI2367329, Length=229, Percent_Identity=35.8078602620087, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1788394, Length=220, Percent_Identity=34.0909090909091, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787229, Length=222, Percent_Identity=30.6306306306306, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1790863, Length=227, Percent_Identity=29.9559471365639, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI145693140, Length=236, Percent_Identity=29.2372881355932, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788550, Length=162, Percent_Identity=32.7160493827161, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1790437, Length=124, Percent_Identity=36.2903225806452, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790299, Length=134, Percent_Identity=32.8358208955224, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787487, Length=108, Percent_Identity=35.1851851851852, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788713, Length=92, Percent_Identity=38.0434782608696, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1788191, Length=121, Percent_Identity=33.0578512396694, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI48994928, Length=121, Percent_Identity=34.7107438016529, Blast_Score=62, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322000, Length=176, Percent_Identity=26.7045454545455, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 23882; Mature: 23882

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGI
CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCEEEEEEECCCCCCCCH
DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS
HHHHHHHHCCCHHHHHEEEHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHC
GRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG
CCHHHHHHHCCEEECCCCCEEEECCCCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
WGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKEA
CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
>Mature Secondary Structure
MRILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGI
CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCEEEEEEECCCCCCCCH
DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS
HHHHHHHHCCCHHHHHEEEHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHC
GRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG
CCHHHHHHHCCEEECCCCCEEEECCCCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
WGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKEA
CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]