| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is dat [H]
Identifier: 126452552
GI number: 126452552
Start: 423974
End: 424921
Strand: Direct
Name: dat [H]
Synonym: BURPS1106A_0459
Alternate gene names: 126452552
Gene position: 423974-424921 (Clockwise)
Preceding gene: 126454122
Following gene: 126454249
Centisome position: 10.63
GC content: 69.83
Gene sequence:
>948_bases ATGAATCAAGCCGACATCGAACCGATCGTCTATCTGAGCGTCGCTTCGCACGAGGAGCTGGTGCCGCTTTCCGAAGCGCG CGTGCCGGTGCTCGACCGCGGCTTCATCTTCGGCGACGGCGTGTACGAAGTCGTGCCGGTCTACGCGGACGGCGCGCGCC GCGCGCCGTTCCGGATCGCGCAGCATCTCGCGCGCCTCGCGCGCAGCCTGAAGAGGATCGGCATCGCCGACCCGCACGAC GAAGCGGGCTGGCGCGCGCTCGTCGCGCAGGTCGTCGACGCGAACGCGGCCGCGCTCGGCGACGGCCGGCACGCGATCGT CTATATCCAGGTGACGCGCGGCGTCGCGAAGCGCGGCCACGCGTTCCCGGCGAACGCTGTGCCGACGGTGTTCGCGATGG CGAGCCCGCTCGCGCTGCCGAGCGACGCGCAGCGCGCGCAGGGCGTGCGCTGCGTGACGGCCGAGGATCGCCGCTGGCTG CATTGCGACATCAAATCGGTGTCGCTGCTCGGCAACGTGCTGATGGCGCAGCACGCGGCGGAGCACGATGCGATCGAGAC GATCCAGCTGCGCGACGGCAACGTGACGGAAGGTTCGTCGTCGAATGTATGGATCGTGAAGAACGGCGAGCTGATCGCGC CGCCGCGCAGCAACCGGATTCTCGAGGGCATCCGCTACGCGCTCGTCGAGGAGCTCGCCGAGGAATGCGGGATTCGCTTC GTCGCGCGCGAGATCAACGAAGCGGAGCTGCGCGCGGCCGACGAGATCCTGCTCACGTCGGCGACGAAGGAAGTCCTGCC CGTGACGCGGCTCGACGATCTGCCCGTGCAGGGCGGCCGGCCGGGCCCGGTGTTCGACGCGCTGTACGCCGCGTACCAGC GCGCGAAGGCGCGCGAGATGGAAGCGTCTGAGCGGGCCGTGCCGCCGACGCGTGGAGAAACGACATGA
Upstream 100 bases:
>100_bases AAAAGAAGTAAGCTGTCCGCTCGCGTCGAGCGCGGCGCCGGCCTCGCCGGCGCCGCGGGCTTTCGCTTTCCGTCACGATT TTCGCCGTCCGTTCAACGCC
Downstream 100 bases:
>100_bases CCGAACCGAACAAGACCGTCGAGCTGACAGGCGAAATCGCCACGCCCAAGGAAACGCTGCTCGAGTTTCCGTGCGACTTC CCGATCAAGGTGATGGGCCG
Product: putative D-amino acid aminotransferase
Products: NA
Alternate protein names: D-amino acid aminotransferase; D-amino acid transaminase; DAAT; D-aspartate aminotransferase [H]
Number of amino acids: Translated: 315; Mature: 315
Protein sequence:
>315_residues MNQADIEPIVYLSVASHEELVPLSEARVPVLDRGFIFGDGVYEVVPVYADGARRAPFRIAQHLARLARSLKRIGIADPHD EAGWRALVAQVVDANAAALGDGRHAIVYIQVTRGVAKRGHAFPANAVPTVFAMASPLALPSDAQRAQGVRCVTAEDRRWL HCDIKSVSLLGNVLMAQHAAEHDAIETIQLRDGNVTEGSSSNVWIVKNGELIAPPRSNRILEGIRYALVEELAEECGIRF VAREINEAELRAADEILLTSATKEVLPVTRLDDLPVQGGRPGPVFDALYAAYQRAKAREMEASERAVPPTRGETT
Sequences:
>Translated_315_residues MNQADIEPIVYLSVASHEELVPLSEARVPVLDRGFIFGDGVYEVVPVYADGARRAPFRIAQHLARLARSLKRIGIADPHD EAGWRALVAQVVDANAAALGDGRHAIVYIQVTRGVAKRGHAFPANAVPTVFAMASPLALPSDAQRAQGVRCVTAEDRRWL HCDIKSVSLLGNVLMAQHAAEHDAIETIQLRDGNVTEGSSSNVWIVKNGELIAPPRSNRILEGIRYALVEELAEECGIRF VAREINEAELRAADEILLTSATKEVLPVTRLDDLPVQGGRPGPVFDALYAAYQRAKAREMEASERAVPPTRGETT >Mature_315_residues MNQADIEPIVYLSVASHEELVPLSEARVPVLDRGFIFGDGVYEVVPVYADGARRAPFRIAQHLARLARSLKRIGIADPHD EAGWRALVAQVVDANAAALGDGRHAIVYIQVTRGVAKRGHAFPANAVPTVFAMASPLALPSDAQRAQGVRCVTAEDRRWL HCDIKSVSLLGNVLMAQHAAEHDAIETIQLRDGNVTEGSSSNVWIVKNGELIAPPRSNRILEGIRYALVEELAEECGIRF VAREINEAELRAADEILLTSATKEVLPVTRLDDLPVQGGRPGPVFDALYAAYQRAKAREMEASERAVPPTRGETT
Specific function: Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha- keto acid in
COG id: COG0115
COG function: function code EH; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Escherichia coli, GI48994963, Length=288, Percent_Identity=26.7361111111111, Blast_Score=75, Evalue=4e-15,
Paralogues:
None
Copy number: 2342 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 11,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001544 - InterPro: IPR018300 - InterPro: IPR005784 [H]
Pfam domain/function: PF01063 Aminotran_4 [H]
EC number: =2.6.1.21 [H]
Molecular weight: Translated: 34255; Mature: 34255
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQADIEPIVYLSVASHEELVPLSEARVPVLDRGFIFGDGVYEVVPVYADGARRAPFRIA CCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCEEECCCCEEEEEEECCCCCCCHHHHH QHLARLARSLKRIGIADPHDEAGWRALVAQVVDANAAALGDGRHAIVYIQVTRGVAKRGH HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHEECCCCEEEEEEEEECCHHHCCC AFPANAVPTVFAMASPLALPSDAQRAQGVRCVTAEDRRWLHCDIKSVSLLGNVLMAQHAA CCCCCCHHHHHHHHCCCCCCCCHHHHCCEEEEEECCCEEEEECHHHHHHHHHHHHHHHHH EHDAIETIQLRDGNVTEGSSSNVWIVKNGELIAPPRSNRILEGIRYALVEELAEECGIRF CCCCEEEEEECCCCCCCCCCCCEEEEECCCEECCCCCCHHHHHHHHHHHHHHHHHCCCEE VAREINEAELRAADEILLTSATKEVLPVTRLDDLPVQGGRPGPVFDALYAAYQRAKAREM HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH EASERAVPPTRGETT HHHHCCCCCCCCCCC >Mature Secondary Structure MNQADIEPIVYLSVASHEELVPLSEARVPVLDRGFIFGDGVYEVVPVYADGARRAPFRIA CCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCEEECCCCEEEEEEECCCCCCCHHHHH QHLARLARSLKRIGIADPHDEAGWRALVAQVVDANAAALGDGRHAIVYIQVTRGVAKRGH HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHEECCCCEEEEEEEEECCHHHCCC AFPANAVPTVFAMASPLALPSDAQRAQGVRCVTAEDRRWLHCDIKSVSLLGNVLMAQHAA CCCCCCHHHHHHHHCCCCCCCCHHHHCCEEEEEECCCEEEEECHHHHHHHHHHHHHHHHH EHDAIETIQLRDGNVTEGSSSNVWIVKNGELIAPPRSNRILEGIRYALVEELAEECGIRF CCCCEEEEEECCCCCCCCCCCCEEEEECCCEECCCCCCHHHHHHHHHHHHHHHHHCCCEE VAREINEAELRAADEILLTSATKEVLPVTRLDDLPVQGGRPGPVFDALYAAYQRAKAREM HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH EASERAVPPTRGETT HHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9003455 [H]