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The map label for this gene is rpoE [H]

Identifier: 126452308

GI number: 126452308

Start: 2276243

End: 2276950

Strand: Reverse

Name: rpoE [H]

Synonym: BURPS1106A_2293

Alternate gene names: 126452308

Gene position: 2276950-2276243 (Counterclockwise)

Preceding gene: 126454831

Following gene: 126452423

Centisome position: 57.09

GC content: 72.32

Gene sequence:

>708_bases
GTGGGTCAATTCGGCCGGGCGGTCGACGAACATGGCGCGGACGCCGCGCACGGCAGCGATCGGACGGCCGGCGCGGCCGC
CGACGCGGCGGCGCGCGGCGAGCGTTTTCGCGCGCTCGCGCTGCCGCATCTGGACGCCGCATACAACCTCGCGCGCTGGC
TGTGCGGCAATTCGAGCGACGCGGACGACGTCGTGCAGGAGGCGTGCATGCGCGCGTTGCGCTTTCTCGATTCGTGCCGC
GGCGACAACGCGCGGCCGTGGCTGCTGACGATCGTGCGCCATACCTGGTACAGCGAATGGCGGCGGCGGGCGAACGCGCA
CGAAGTGGCCGCCGACGCGCTCGACGCGGCCGATTCGACGGACGATTGGCATCCGGCGGTGGAGGACCCGCTCGCGCTTC
TTTTGCGCAGTGAAGACGCGCATCGCGTGAACGCCGCGCTCGCGAAGCTGCCGCCCGAATATCGGGAGGTGCTCGTTTTG
CGCGAAATGGAGGACATGAGTTACCGCGAGATTGCGGCAATCGCGGACCTGCCGGTCGGGACGGTGATGTCGCGGCTCGC
ACGGGCGCGGCGGCGGCTCGCGGCGACGCTCGGCGGCGCGCCCGCGTCGCGGTCGGCCGCACAGGGGCACCCGGGCGAGC
GCGCGGCGCAGCGCGAACGCGGCGCGCCGGCATCCGGAACCGCATCGGAGGCCATCGATGGACTGTAA

Upstream 100 bases:

>100_bases
CGACGGGCGGTAAGGATGCCTGAGCGCATGCGCGCCGTGATCGGCGGCGTGCGTCGGACGCAAGCGGCCGGCGGGCGGCC
GCGCATCGCGGGGAGGCGAC

Downstream 100 bases:

>100_bases
CGAAACGCGTGCGCTGCTCGGCGCGGATGTCGACCACGAGCTTTCCGCGGCCGATGCGTGGCGGATCGCGCGGCACGTCG
GCGGATGCGGCGCGTGCCGT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MGQFGRAVDEHGADAAHGSDRTAGAAADAAARGERFRALALPHLDAAYNLARWLCGNSSDADDVVQEACMRALRFLDSCR
GDNARPWLLTIVRHTWYSEWRRRANAHEVAADALDAADSTDDWHPAVEDPLALLLRSEDAHRVNAALAKLPPEYREVLVL
REMEDMSYREIAAIADLPVGTVMSRLARARRRLAATLGGAPASRSAAQGHPGERAAQRERGAPASGTASEAIDGL

Sequences:

>Translated_235_residues
MGQFGRAVDEHGADAAHGSDRTAGAAADAAARGERFRALALPHLDAAYNLARWLCGNSSDADDVVQEACMRALRFLDSCR
GDNARPWLLTIVRHTWYSEWRRRANAHEVAADALDAADSTDDWHPAVEDPLALLLRSEDAHRVNAALAKLPPEYREVLVL
REMEDMSYREIAAIADLPVGTVMSRLARARRRLAATLGGAPASRSAAQGHPGERAAQRERGAPASGTASEAIDGL
>Mature_234_residues
GQFGRAVDEHGADAAHGSDRTAGAAADAAARGERFRALALPHLDAAYNLARWLCGNSSDADDVVQEACMRALRFLDSCRG
DNARPWLLTIVRHTWYSEWRRRANAHEVAADALDAADSTDDWHPAVEDPLALLLRSEDAHRVNAALAKLPPEYREVLVLR
EMEDMSYREIAAIADLPVGTVMSRLARARRRLAATLGGAPASRSAAQGHPGERAAQRERGAPASGTASEAIDGL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=138, Percent_Identity=40.5797101449275, Blast_Score=78, Evalue=5e-16,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 25352; Mature: 25221

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQFGRAVDEHGADAAHGSDRTAGAAADAAARGERFRALALPHLDAAYNLARWLCGNSSD
CCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
ADDVVQEACMRALRFLDSCRGDNARPWLLTIVRHTWYSEWRRRANAHEVAADALDAADST
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
DDWHPAVEDPLALLLRSEDAHRVNAALAKLPPEYREVLVLREMEDMSYREIAAIADLPVG
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
TVMSRLARARRRLAATLGGAPASRSAAQGHPGERAAQRERGAPASGTASEAIDGL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
GQFGRAVDEHGADAAHGSDRTAGAAADAAARGERFRALALPHLDAAYNLARWLCGNSSD
CCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
ADDVVQEACMRALRFLDSCRGDNARPWLLTIVRHTWYSEWRRRANAHEVAADALDAADST
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
DDWHPAVEDPLALLLRSEDAHRVNAALAKLPPEYREVLVLREMEDMSYREIAAIADLPVG
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
TVMSRLARARRRLAATLGGAPASRSAAQGHPGERAAQRERGAPASGTASEAIDGL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]