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The map label for this gene is arnB [H]

Identifier: 126452183

GI number: 126452183

Start: 2260661

End: 2261812

Strand: Direct

Name: arnB [H]

Synonym: BURPS1106A_2275

Alternate gene names: 126452183

Gene position: 2260661-2261812 (Clockwise)

Preceding gene: 126451934

Following gene: 126454149

Centisome position: 56.68

GC content: 67.36

Gene sequence:

>1152_bases
ATGAGCCAGACTTCCGTTCCTTTCCTGCCGTTCGTCAAACCCGAGATCGACGAGGAAACCATTCAGGGCGTGGCCGACGT
GCTGCGCTCCGGCTGGATCACGACCGGCCCGCAGTGCCAGCGCTTCGAGGCCGCGCTGTCCGAATACTGCGGCGGGCGTC
CCGTGCGCGTGTTCAACTCGGGCACGGCGACGCTCGAGATCGGCCTGCGGATCGCGGGCGTCGGCCCCGGCGACGAAGTG
ATCACGACGCCCGCGTCGTGGGTCGCGACGAGCAACGTGATCCTCGAGACGGGCGCGACGCCCGTGTTCGTCGACATCGA
TCCCGTCACGCGCAACCTCGATCTCGGCCTCGTCGAAAAGGCGATCACGCCGCGCACGAAGGCGATCATCCCGGTGTACC
TCGCGGGCCTGCCCGTCGACATGGACCGCCTCTACGCGATCGCGCGCGCGCACGAGTTGCGCGTGATCGAGGACGCCGCG
CAGGCGCTCGGCTCGACGTGGCGCGGCCAGCGCATCGGCGCGATCGGCGACATCGTGTCGTTCAGCTTCCATCCGAACAA
GAACATCACGTCGATCGAAGGCGGCGCGCTCGTGCTCAACGACGAGGCCGAGGCGACGCTCGCGCAGAAGTACCGGCTGC
AGGGCATCACGCGCACGGGCCTCGACGGGATGGACTGCGACGTGCTCGGCGGCAAGTACAATCTGACCGACGTCGCCGCG
CGCGTCGGCTGGGGCCAGCTCGCGCACCTCGAACGCTTCAACGCGACGCGGCACGCGCTCGCGCGCCGCTACTTCGACGC
GTTCGCGAACGGGCCCGCGTGCGCGCTCGGCGTCGGGCTGCCCGTCGCGGATTTCGAAAACACCAACTGGCACATGTTCC
AGATCACGCTGCCGCTCGAGAAGCTGTCGATCTCGCGCGGCGAATTCATGGAGCAGTTGAAGCAGCGCGGCATCGGCTCG
GGCGTCCATTACCCGGCCATTCATCTTTTCACGCTGTACCGCGCGCGCGGCTTTGCGCAGGGCATGTTCCCCCACGCCGA
GCGCTTCGGCGCGTCGACCGTCACGCTGCCGCTCTTCACGCAGATGAGCGAGGCGCACGTGCAACGGGTCGTCGACGCCG
TCAACCAGATTTGCGAACAATACGGAAAATAA

Upstream 100 bases:

>100_bases
CGGACCGACAAAAAGTGACGTACCCGTTCCGGCGAACAGTGTTAAATGCGCGTGTCGGGCGGCGCCCGATTTCTTTCACA
CGACAACGAGCGAAGCTTAC

Downstream 100 bases:

>100_bases
GCGGACATGACTCACCCTGAAACACGCGCGACGCATCCTGAAGTTTCGATCGTCATCCCCGTGTACAACGAGGAAGCGGG
GCTCGCCGCGCTCTTCGCGC

Product: aminotransferase

Products: NA

Alternate protein names: UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase; UDP-Ara4O aminotransferase; UDP-4-amino-4-deoxy-L-arabinose aminotransferase [H]

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MSQTSVPFLPFVKPEIDEETIQGVADVLRSGWITTGPQCQRFEAALSEYCGGRPVRVFNSGTATLEIGLRIAGVGPGDEV
ITTPASWVATSNVILETGATPVFVDIDPVTRNLDLGLVEKAITPRTKAIIPVYLAGLPVDMDRLYAIARAHELRVIEDAA
QALGSTWRGQRIGAIGDIVSFSFHPNKNITSIEGGALVLNDEAEATLAQKYRLQGITRTGLDGMDCDVLGGKYNLTDVAA
RVGWGQLAHLERFNATRHALARRYFDAFANGPACALGVGLPVADFENTNWHMFQITLPLEKLSISRGEFMEQLKQRGIGS
GVHYPAIHLFTLYRARGFAQGMFPHAERFGASTVTLPLFTQMSEAHVQRVVDAVNQICEQYGK

Sequences:

>Translated_383_residues
MSQTSVPFLPFVKPEIDEETIQGVADVLRSGWITTGPQCQRFEAALSEYCGGRPVRVFNSGTATLEIGLRIAGVGPGDEV
ITTPASWVATSNVILETGATPVFVDIDPVTRNLDLGLVEKAITPRTKAIIPVYLAGLPVDMDRLYAIARAHELRVIEDAA
QALGSTWRGQRIGAIGDIVSFSFHPNKNITSIEGGALVLNDEAEATLAQKYRLQGITRTGLDGMDCDVLGGKYNLTDVAA
RVGWGQLAHLERFNATRHALARRYFDAFANGPACALGVGLPVADFENTNWHMFQITLPLEKLSISRGEFMEQLKQRGIGS
GVHYPAIHLFTLYRARGFAQGMFPHAERFGASTVTLPLFTQMSEAHVQRVVDAVNQICEQYGK
>Mature_382_residues
SQTSVPFLPFVKPEIDEETIQGVADVLRSGWITTGPQCQRFEAALSEYCGGRPVRVFNSGTATLEIGLRIAGVGPGDEVI
TTPASWVATSNVILETGATPVFVDIDPVTRNLDLGLVEKAITPRTKAIIPVYLAGLPVDMDRLYAIARAHELRVIEDAAQ
ALGSTWRGQRIGAIGDIVSFSFHPNKNITSIEGGALVLNDEAEATLAQKYRLQGITRTGLDGMDCDVLGGKYNLTDVAAR
VGWGQLAHLERFNATRHALARRYFDAFANGPACALGVGLPVADFENTNWHMFQITLPLEKLSISRGEFMEQLKQRGIGSG
VHYPAIHLFTLYRARGFAQGMFPHAERFGASTVTLPLFTQMSEAHVQRVVDAVNQICEQYGK

Specific function: Catalyzes the conversion of UDP-4-keto-arabinose (UDP- Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family. ArnB subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=384, Percent_Identity=41.1458333333333, Blast_Score=249, Evalue=3e-67,
Organism=Escherichia coli, GI2367285, Length=373, Percent_Identity=33.5120643431635, Blast_Score=176, Evalue=2e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022850
- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: =2.6.1.87 [H]

Molecular weight: Translated: 41713; Mature: 41582

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTSVPFLPFVKPEIDEETIQGVADVLRSGWITTGPQCQRFEAALSEYCGGRPVRVFNS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
GTATLEIGLRIAGVGPGDEVITTPASWVATSNVILETGATPVFVDIDPVTRNLDLGLVEK
CCEEEEEEEEEEECCCCCCEEECCHHHHEECCEEEECCCCEEEEECCCCCCCCCHHHHHH
AITPRTKAIIPVYLAGLPVDMDRLYAIARAHELRVIEDAAQALGSTWRGQRIGAIGDIVS
HCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEE
FSFHPNKNITSIEGGALVLNDEAEATLAQKYRLQGITRTGLDGMDCDVLGGKYNLTDVAA
EEECCCCCCEEECCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHH
RVGWGQLAHLERFNATRHALARRYFDAFANGPACALGVGLPVADFENTNWHMFQITLPLE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEECHH
KLSISRGEFMEQLKQRGIGSGVHYPAIHLFTLYRARGFAQGMFPHAERFGASTVTLPLFT
HHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEHHHH
QMSEAHVQRVVDAVNQICEQYGK
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQTSVPFLPFVKPEIDEETIQGVADVLRSGWITTGPQCQRFEAALSEYCGGRPVRVFNS
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
GTATLEIGLRIAGVGPGDEVITTPASWVATSNVILETGATPVFVDIDPVTRNLDLGLVEK
CCEEEEEEEEEEECCCCCCEEECCHHHHEECCEEEECCCCEEEEECCCCCCCCCHHHHHH
AITPRTKAIIPVYLAGLPVDMDRLYAIARAHELRVIEDAAQALGSTWRGQRIGAIGDIVS
HCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEE
FSFHPNKNITSIEGGALVLNDEAEATLAQKYRLQGITRTGLDGMDCDVLGGKYNLTDVAA
EEECCCCCCEEECCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHH
RVGWGQLAHLERFNATRHALARRYFDAFANGPACALGVGLPVADFENTNWHMFQITLPLE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEECHH
KLSISRGEFMEQLKQRGIGSGVHYPAIHLFTLYRARGFAQGMFPHAERFGASTVTLPLFT
HHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEHHHH
QMSEAHVQRVVDAVNQICEQYGK
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA