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The map label for this gene is ygcF [H]

Identifier: 126452181

GI number: 126452181

Start: 161558

End: 162190

Strand: Direct

Name: ygcF [H]

Synonym: BURPS1106A_0172

Alternate gene names: 126452181

Gene position: 161558-162190 (Clockwise)

Preceding gene: 126455276

Following gene: 126452633

Centisome position: 4.05

GC content: 66.35

Gene sequence:

>633_bases
ATGACGTACACGGTCAAGGAAATTTTCTATACGTTGCAGGGCGAGGGCGCGAACGCCGGCCGTCCGGCCGTGTTCTGCCG
GTTCGCCGGCTGCAACCTCTGGACGGGGCGCGAAGCGGACCGCGACGGCGCGGTGTGCCGCTTCTGCGATACCGACTTCG
TCGGCACCGACGGCGAGAACGGCGGCAAGTTCGAGGATGCCGCTTCGCTCGCGGCGAGGATCGCGTCGCTCTGGCCGGCG
GGCGAGGCGTATCGCTTCGTCGTCTGCACGGGCGGCGAGCCGATGCTGCAGCTCGATCAGCCGCTCGTCGACGCGCTGCA
CGCGGCGGGCTTCACGATCGCGATCGAGACGAACGGCTCGCTGCCCGTGCTCGAATCGATCGACTGGATCTGCGTGAGCC
CGAAGGCGGATGCGCCGCTCGTCGTCACGAAGGGCAACGAACTGAAGGTGGTGGTGCCGCAGGACAACCAGCGCCTTGCC
GATTACGCGAAGCTCGACTTCGAGCATTTCCTCGTGCAGCCGATGGACGGCCCGTCGCGCGAGCTCAACACCCGGCTCGC
GATCGATTGGTGCAAGCGTCATCCGCGGTGGCGGCTGTCGATGCAGACGCACAAGTACCTGAACATTCCCTGA

Upstream 100 bases:

>100_bases
CGCCTGACGCACGGCTGGCACGGCGCACGCGCGTGGCGCGGGCGGCAACGAGATTCATCGAACAACGGAAAGCGAGCGGC
GCGAGCCGGAACGAAGCAGC

Downstream 100 bases:

>100_bases
GCCTGACGCTTCATTCATCGTGCTGATTACCCGAAAACTCGAATTCGACGCGGGGCACCGCATCCCCGATCACCGCAGCC
AGTGCCGCAATCTGCACGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGENGGKFEDAASLAARIASLWPA
GEAYRFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGSLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLA
DYAKLDFEHFLVQPMDGPSRELNTRLAIDWCKRHPRWRLSMQTHKYLNIP

Sequences:

>Translated_210_residues
MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGENGGKFEDAASLAARIASLWPA
GEAYRFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGSLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLA
DYAKLDFEHFLVQPMDGPSRELNTRLAIDWCKRHPRWRLSMQTHKYLNIP
>Mature_209_residues
TYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGENGGKFEDAASLAARIASLWPAG
EAYRFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGSLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLAD
YAKLDFEHFLVQPMDGPSRELNTRLAIDWCKRHPRWRLSMQTHKYLNIP

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=239, Percent_Identity=34.3096234309623, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23238; Mature: 23106

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGEN
CEEEEEEEEEEEECCCCCCCCCEEEEEEECCCEECCCCCCCCCCEEEEECCCCCCCCCCC
GGKFEDAASLAARIASLWPAGEAYRFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGS
CCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEECHHHHHHHHHCCEEEEEECCCC
LPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPSR
CCHHHCCCEEEECCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHCHHHEEEECCCCCCC
ELNTRLAIDWCKRHPRWRLSMQTHKYLNIP
CCCCEEEEEHHHCCCCEEEEEECCEEECCC
>Mature Secondary Structure 
TYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGEN
EEEEEEEEEEEECCCCCCCCCEEEEEEECCCEECCCCCCCCCCEEEEECCCCCCCCCCC
GGKFEDAASLAARIASLWPAGEAYRFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGS
CCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEECHHHHHHHHHCCEEEEEECCCC
LPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPSR
CCHHHCCCEEEECCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHCHHHEEEECCCCCCC
ELNTRLAIDWCKRHPRWRLSMQTHKYLNIP
CCCCEEEEEHHHCCCCEEEEEECCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]