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The map label for this gene is yybR [H]

Identifier: 126452115

GI number: 126452115

Start: 3079313

End: 3079747

Strand: Reverse

Name: yybR [H]

Synonym: BURPS1106A_3163

Alternate gene names: 126452115

Gene position: 3079747-3079313 (Counterclockwise)

Preceding gene: 126454360

Following gene: 126455449

Centisome position: 77.22

GC content: 64.14

Gene sequence:

>435_bases
ATGCGACCGAAGCGTTTCGACAGCAAGAGCGGGTGTTCCGTCGAGGTGACCCTTTCGGTCATCGGCGGACTGTGGAAGCC
AGTGATCCTGTTTCATCTCCTGAAAGAGAAAAAGCGTTTCATGGAGCTCACGCGGCTGATGCCGAACACCACCCAGCGAA
TGTTGACGCTGCAATTGCGCGAACTGGAGGCGGACGGCATCGTCGCGCGGCATGTCTATCCGCAGGTGCCGCCGAAGGTC
GAATACGAACTGACGCCGTTCGGCAAGACGCTCGCCCCGGTACTGATCAGCCTGCGGGAGTGGGGCGATGCGTATCGGAC
ACACCAACTGGGAGCCGGTTCGGCCAGTTCAGCCGAGCCGGCCCGTGACGCGGCGTCGTGCGACGCGCCGGCTCGGCCGC
GAAGTCGTGCGGCCGGCGCGATGAAGGCGGCGTAG

Upstream 100 bases:

>100_bases
CCCGGCCGATGGCGGATGTGCGAATTGTCCGCACCTGCTTCTTTCGGCGCAAGAACGTACAATTAACGCAGGTACTATCA
ATTCTGTAGGTACGTGCACG

Downstream 100 bases:

>100_bases
CGCGCCGGCTGACGGACGTACCGGCCGGGTGCGCGTCCGCTCGGATCGAGAGGGCAATCCTGGCGGCTTGCGCGCGGGCG
CGTCGGCGGCTTCACGCGGT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MRPKRFDSKSGCSVEVTLSVIGGLWKPVILFHLLKEKKRFMELTRLMPNTTQRMLTLQLRELEADGIVARHVYPQVPPKV
EYELTPFGKTLAPVLISLREWGDAYRTHQLGAGSASSAEPARDAASCDAPARPRSRAAGAMKAA

Sequences:

>Translated_144_residues
MRPKRFDSKSGCSVEVTLSVIGGLWKPVILFHLLKEKKRFMELTRLMPNTTQRMLTLQLRELEADGIVARHVYPQVPPKV
EYELTPFGKTLAPVLISLREWGDAYRTHQLGAGSASSAEPARDAASCDAPARPRSRAAGAMKAA
>Mature_144_residues
MRPKRFDSKSGCSVEVTLSVIGGLWKPVILFHLLKEKKRFMELTRLMPNTTQRMLTLQLRELEADGIVARHVYPQVPPKV
EYELTPFGKTLAPVLISLREWGDAYRTHQLGAGSASSAEPARDAASCDAPARPRSRAAGAMKAA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=90, Percent_Identity=35.5555555555556, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 15916; Mature: 15916

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPKRFDSKSGCSVEVTLSVIGGLWKPVILFHLLKEKKRFMELTRLMPNTTQRMLTLQLR
CCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ELEADGIVARHVYPQVPPKVEYELTPFGKTLAPVLISLREWGDAYRTHQLGAGSASSAEP
HHCCCCEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
ARDAASCDAPARPRSRAAGAMKAA
CHHHHCCCCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MRPKRFDSKSGCSVEVTLSVIGGLWKPVILFHLLKEKKRFMELTRLMPNTTQRMLTLQLR
CCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ELEADGIVARHVYPQVPPKVEYELTPFGKTLAPVLISLREWGDAYRTHQLGAGSASSAEP
HHCCCCEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
ARDAASCDAPARPRSRAAGAMKAA
CHHHHCCCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]