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The map label for this gene is ycfH [C]

Identifier: 126452010

GI number: 126452010

Start: 2293855

End: 2294664

Strand: Reverse

Name: ycfH [C]

Synonym: BURPS1106A_2317

Alternate gene names: 126452010

Gene position: 2294664-2293855 (Counterclockwise)

Preceding gene: 126451664

Following gene: 126453929

Centisome position: 57.53

GC content: 67.28

Gene sequence:

>810_bases
ATGTTCGTCGATTCACACTGTCACATCAATTTCGAAGGGCTCGCCGAGCGTTTGCCGCAGGTGCTGGAGAACATGCGCGA
GCACGGCGTCACGCATGCGCTCTGCGTCTCGGTCGATCTGGAGACGCTGCCCGCCGTGCTCGCTATCGCGCGCGATCACG
ACAACGTTTTCGCGTCGGTCGGCGTGCATCCGGATCACGAGGACGCGAGGGAGCCGACGGTGGCCGAGCTCGTCGAGCTC
GCCGCGCATCCGAAGGTCGTCGCGATCGGCGAGACGGGCCTCGACTACTACCGGCTCGAGGGCCGCTCGATCGCCGACAT
GCAATGGCAGCGCGAGCGCTTTCGCACGCACATCCGCGCCGCGCATGCGACAGGCAAGCCGCTCATCGTCCATACGCGCG
CGTCGTCGGAGGACACGCTGCGGATCATGGCCGAGGAGCGCGCGAGCGTGCCGGGCGGCGTGATGCACTGCTTCACCGAG
CCGTGGCCCGTCGCCGAGGCGGCGCTGGCGCAGAACTTCCATATCTCGCTGTCGGGCATCGTCACGTTCAAGAGCGCGGC
CGACGTGCAGGAGGTCGCGCGGCGCGTGCCGCTCGAGCGGCTGCTGATCGAGACCGATTCGCCGTACCTCGCGCCCGTGC
CGTATCGCGGCAAGCGGAATGAACCTGCGTACGTGAGTTATGTCGGACGCTTTATCGCGGCGCAACGCGAGATGACCGAC
GAGGCGCTCGGCGCCGCGACGTCGCGGAACTTTTTCCGGCTGTTCAAGATCGCCCGCACGGGCGAGGCCAGCCCAGTCAA
CCAGGGGTAG

Upstream 100 bases:

>100_bases
CGGCAAGCGGCTCGCCGACGCCTGAGCGCGGCCCGGCGCGGCGAGCGGGCGCGCATGCCCGCCCGGCGCCCGGCACGCGC
TGCGCAGCAAGGAATTCAAC

Downstream 100 bases:

>100_bases
GAGCAAAAAAATGAAGTCGATCAAGCACTTGTCGAAACAACGCACGATGGGCGCCAGGCTGCGCGCGCTCGCGCTCGCGC
TCGCGGGCGGGCTCGGCGCG

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MFVDSHCHINFEGLAERLPQVLENMREHGVTHALCVSVDLETLPAVLAIARDHDNVFASVGVHPDHEDAREPTVAELVEL
AAHPKVVAIGETGLDYYRLEGRSIADMQWQRERFRTHIRAAHATGKPLIVHTRASSEDTLRIMAEERASVPGGVMHCFTE
PWPVAEAALAQNFHISLSGIVTFKSAADVQEVARRVPLERLLIETDSPYLAPVPYRGKRNEPAYVSYVGRFIAAQREMTD
EALGAATSRNFFRLFKIARTGEASPVNQG

Sequences:

>Translated_269_residues
MFVDSHCHINFEGLAERLPQVLENMREHGVTHALCVSVDLETLPAVLAIARDHDNVFASVGVHPDHEDAREPTVAELVEL
AAHPKVVAIGETGLDYYRLEGRSIADMQWQRERFRTHIRAAHATGKPLIVHTRASSEDTLRIMAEERASVPGGVMHCFTE
PWPVAEAALAQNFHISLSGIVTFKSAADVQEVARRVPLERLLIETDSPYLAPVPYRGKRNEPAYVSYVGRFIAAQREMTD
EALGAATSRNFFRLFKIARTGEASPVNQG
>Mature_269_residues
MFVDSHCHINFEGLAERLPQVLENMREHGVTHALCVSVDLETLPAVLAIARDHDNVFASVGVHPDHEDAREPTVAELVEL
AAHPKVVAIGETGLDYYRLEGRSIADMQWQRERFRTHIRAAHATGKPLIVHTRASSEDTLRIMAEERASVPGGVMHCFTE
PWPVAEAALAQNFHISLSGIVTFKSAADVQEVARRVPLERLLIETDSPYLAPVPYRGKRNEPAYVSYVGRFIAAQREMTD
EALGAATSRNFFRLFKIARTGEASPVNQG

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=227, Percent_Identity=30.8370044052863, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI14042943, Length=269, Percent_Identity=27.1375464684015, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI225903439, Length=246, Percent_Identity=27.6422764227642, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI110349730, Length=268, Percent_Identity=25.7462686567164, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI110349734, Length=268, Percent_Identity=25.7462686567164, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI226061853, Length=273, Percent_Identity=25.2747252747253, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI226061614, Length=263, Percent_Identity=24.3346007604563, Blast_Score=68, Evalue=9e-12,
Organism=Escherichia coli, GI1787342, Length=264, Percent_Identity=44.3181818181818, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI48994985, Length=236, Percent_Identity=32.6271186440678, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI87082439, Length=262, Percent_Identity=26.7175572519084, Blast_Score=99, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17559024, Length=230, Percent_Identity=30, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17565396, Length=308, Percent_Identity=26.6233766233766, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71980746, Length=261, Percent_Identity=23.7547892720307, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17543026, Length=300, Percent_Identity=25.6666666666667, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24648690, Length=289, Percent_Identity=25.2595155709343, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI221330018, Length=270, Percent_Identity=26.2962962962963, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24586117, Length=270, Percent_Identity=26.2962962962963, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 29853; Mature: 29853

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVDSHCHINFEGLAERLPQVLENMREHGVTHALCVSVDLETLPAVLAIARDHDNVFASV
CEECCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHCCCCCEEEEE
GVHPDHEDAREPTVAELVELAAHPKVVAIGETGLDYYRLEGRSIADMQWQRERFRTHIRA
CCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHH
AHATGKPLIVHTRASSEDTLRIMAEERASVPGGVMHCFTEPWPVAEAALAQNFHISLSGI
HCCCCCEEEEEECCCCCCCEEHEEHHHCCCCCHHHHHCCCCCCHHHHHHHCCCEEEEEEE
VTFKSAADVQEVARRVPLERLLIETDSPYLAPVPYRGKRNEPAYVSYVGRFIAAQREMTD
EEECCCCCHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
EALGAATSRNFFRLFKIARTGEASPVNQG
HHHCCHHCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MFVDSHCHINFEGLAERLPQVLENMREHGVTHALCVSVDLETLPAVLAIARDHDNVFASV
CEECCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHCCCCCEEEEE
GVHPDHEDAREPTVAELVELAAHPKVVAIGETGLDYYRLEGRSIADMQWQRERFRTHIRA
CCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHH
AHATGKPLIVHTRASSEDTLRIMAEERASVPGGVMHCFTEPWPVAEAALAQNFHISLSGI
HCCCCCEEEEEECCCCCCCEEHEEHHHCCCCCHHHHHCCCCCCHHHHHHHCCCEEEEEEE
VTFKSAADVQEVARRVPLERLLIETDSPYLAPVPYRGKRNEPAYVSYVGRFIAAQREMTD
EEECCCCCHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
EALGAATSRNFFRLFKIARTGEASPVNQG
HHHCCHHCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]