Definition Burkholderia pseudomallei 1106a chromosome I, complete genome.
Accession NC_009076
Length 3,988,455

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The map label for this gene is yahD [C]

Identifier: 126453929

GI number: 126453929

Start: 2293116

End: 2293844

Strand: Reverse

Name: yahD [C]

Synonym: BURPS1106A_2316

Alternate gene names: 126453929

Gene position: 2293844-2293116 (Counterclockwise)

Preceding gene: 126452010

Following gene: 126454163

Centisome position: 57.51

GC content: 66.94

Gene sequence:

>729_bases
ATGAAGTCGATCAAGCACTTGTCGAAACAACGCACGATGGGCGCCAGGCTGCGCGCGCTCGCGCTCGCGCTCGCGGGCGG
GCTCGGCGCGCTCGCGGCGGCGCCCGCGCACGCGGAATCGCTCGACGGGATCGTGAAGGCCGTCAAGTTCGACGACATCA
AGGACATCTCGAAGCAACTGAAGAACGGCCTCGACCCGAACACGATCGCGCCGAACGGCGATCCGCTCCTCGTGATCGCC
GCGCGCGAGAAGTCCGATCAGGTCGCCGCCGCGCTCGCGGCCGCGCCGAACGTCGAGCTCGACAAGGAAGACAAGGCGGG
CGAGAACGCGCTGATGCTCGCCGCGCTGAACGGCGATCTGCCGCTCGTGAAGCTGCTCGTCGACAAGGGCGCCGAAGTGA
GCAAGAAGGGCTGGTCGCCGCTGCACTACGCGGCGACGAACGGCAACGACGAGGTCGTCAAGTATCTGGTCGACAAGTCC
GCCTACATCGACGCCGCGTCGCCGAACGGCACGACGCCGCTGATGATGGCCGCGCGCGGCAACCACGGCTCTACCGTCAC
GCTGCTGCTCGACCAGGGCGCCGATCCCGCGCTGAAGAACCAGCTCGGCATCACCGCGCTCGATTTCGCGAAGCACTACA
ACGCGCCGGACGCAACCGCGATCCTGTCGAAGCGCACGGTGCGCATCGGCGATGCGCCAGCGCCGAACGCGCAAAAGAGT
GCAAAATAA

Upstream 100 bases:

>100_bases
GAGGCGCTCGGCGCCGCGACGTCGCGGAACTTTTTCCGGCTGTTCAAGATCGCCCGCACGGGCGAGGCCAGCCCAGTCAA
CCAGGGGTAGGAGCAAAAAA

Downstream 100 bases:

>100_bases
GGGTTTGGGGCGCGGCGGCTTGCCGCGCCTTTCGAAGTATCGGCGGTTTCGCCTTCTGACATAAGGAAGATTCATGTTGC
GGGCTATGTTTTGCGCCGCC

Product: ankyrin repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MKSIKHLSKQRTMGARLRALALALAGGLGALAAAPAHAESLDGIVKAVKFDDIKDISKQLKNGLDPNTIAPNGDPLLVIA
AREKSDQVAAALAAAPNVELDKEDKAGENALMLAALNGDLPLVKLLVDKGAEVSKKGWSPLHYAATNGNDEVVKYLVDKS
AYIDAASPNGTTPLMMAARGNHGSTVTLLLDQGADPALKNQLGITALDFAKHYNAPDATAILSKRTVRIGDAPAPNAQKS
AK

Sequences:

>Translated_242_residues
MKSIKHLSKQRTMGARLRALALALAGGLGALAAAPAHAESLDGIVKAVKFDDIKDISKQLKNGLDPNTIAPNGDPLLVIA
AREKSDQVAAALAAAPNVELDKEDKAGENALMLAALNGDLPLVKLLVDKGAEVSKKGWSPLHYAATNGNDEVVKYLVDKS
AYIDAASPNGTTPLMMAARGNHGSTVTLLLDQGADPALKNQLGITALDFAKHYNAPDATAILSKRTVRIGDAPAPNAQKS
AK
>Mature_242_residues
MKSIKHLSKQRTMGARLRALALALAGGLGALAAAPAHAESLDGIVKAVKFDDIKDISKQLKNGLDPNTIAPNGDPLLVIA
AREKSDQVAAALAAAPNVELDKEDKAGENALMLAALNGDLPLVKLLVDKGAEVSKKGWSPLHYAATNGNDEVVKYLVDKS
AYIDAASPNGTTPLMMAARGNHGSTVTLLLDQGADPALKNQLGITALDFAKHYNAPDATAILSKRTVRIGDAPAPNAQKS
AK

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 18 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI38569428, Length=119, Percent_Identity=40.3361344537815, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI38569426, Length=119, Percent_Identity=40.3361344537815, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI148596917, Length=127, Percent_Identity=35.4330708661417, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI30425444, Length=154, Percent_Identity=33.7662337662338, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI223634006, Length=102, Percent_Identity=45.0980392156863, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI52426735, Length=212, Percent_Identity=30.188679245283, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI188595682, Length=156, Percent_Identity=40.3846153846154, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI52426737, Length=128, Percent_Identity=41.40625, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI32967601, Length=160, Percent_Identity=35.625, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI225543463, Length=163, Percent_Identity=34.3558282208589, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI30089994, Length=166, Percent_Identity=33.1325301204819, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI225543461, Length=163, Percent_Identity=34.3558282208589, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI38176283, Length=166, Percent_Identity=33.1325301204819, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI70780355, Length=154, Percent_Identity=37.6623376623377, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI70780359, Length=154, Percent_Identity=37.6623376623377, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI215598574, Length=154, Percent_Identity=37.6623376623377, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI70780357, Length=154, Percent_Identity=37.6623376623377, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI70780353, Length=154, Percent_Identity=37.6623376623377, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI28605137, Length=112, Percent_Identity=39.2857142857143, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI256574792, Length=114, Percent_Identity=36.8421052631579, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI4506217, Length=112, Percent_Identity=39.2857142857143, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI24233530, Length=129, Percent_Identity=39.5348837209302, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI68131557, Length=112, Percent_Identity=43.75, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI304361760, Length=116, Percent_Identity=43.1034482758621, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI304361757, Length=116, Percent_Identity=43.1034482758621, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI12746412, Length=154, Percent_Identity=31.1688311688312, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI7657265, Length=145, Percent_Identity=37.2413793103448, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI157739945, Length=107, Percent_Identity=41.1214953271028, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI62988328, Length=162, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI268607595, Length=162, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI156142184, Length=132, Percent_Identity=32.5757575757576, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI21956645, Length=104, Percent_Identity=41.3461538461538, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI41055989, Length=168, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI157266328, Length=123, Percent_Identity=32.520325203252, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI87239981, Length=137, Percent_Identity=36.4963503649635, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI46519154, Length=155, Percent_Identity=34.8387096774194, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI46519151, Length=155, Percent_Identity=34.8387096774194, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI18079216, Length=125, Percent_Identity=32.8, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI37620163, Length=95, Percent_Identity=42.1052631578947, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI4506499, Length=135, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI46519147, Length=95, Percent_Identity=42.1052631578947, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI13376842, Length=154, Percent_Identity=34.4155844155844, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI134948605, Length=115, Percent_Identity=35.6521739130435, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI134948558, Length=115, Percent_Identity=35.6521739130435, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI38683807, Length=100, Percent_Identity=40, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI38683816, Length=100, Percent_Identity=40, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI121582655, Length=133, Percent_Identity=33.0827067669173, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI67906195, Length=97, Percent_Identity=41.2371134020619, Blast_Score=64, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI212646035, Length=182, Percent_Identity=33.5164835164835, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71981411, Length=194, Percent_Identity=30.4123711340206, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI212646031, Length=182, Percent_Identity=33.5164835164835, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI212646033, Length=182, Percent_Identity=33.5164835164835, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71981414, Length=226, Percent_Identity=27.8761061946903, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17542700, Length=223, Percent_Identity=28.2511210762332, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI25145251, Length=223, Percent_Identity=28.2511210762332, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI71981389, Length=223, Percent_Identity=28.2511210762332, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI212645194, Length=172, Percent_Identity=35.4651162790698, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI161082089, Length=135, Percent_Identity=37.7777777777778, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI161082092, Length=135, Percent_Identity=37.7777777777778, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI161082085, Length=135, Percent_Identity=37.7777777777778, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI161082099, Length=135, Percent_Identity=37.7777777777778, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI161082110, Length=149, Percent_Identity=36.9127516778523, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI161082096, Length=149, Percent_Identity=36.9127516778523, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI161082081, Length=149, Percent_Identity=36.9127516778523, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI161082106, Length=149, Percent_Identity=36.9127516778523, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI281359521, Length=163, Percent_Identity=31.9018404907975, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281359519, Length=163, Percent_Identity=31.9018404907975, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28558752, Length=163, Percent_Identity=31.9018404907975, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28558750, Length=163, Percent_Identity=31.9018404907975, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28558756, Length=163, Percent_Identity=31.9018404907975, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28558754, Length=163, Percent_Identity=31.9018404907975, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI45552223, Length=139, Percent_Identity=33.8129496402878, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221472807, Length=139, Percent_Identity=33.8129496402878, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221330482, Length=138, Percent_Identity=36.231884057971, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221330480, Length=138, Percent_Identity=36.231884057971, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17998549, Length=139, Percent_Identity=33.8129496402878, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221330474, Length=138, Percent_Identity=36.231884057971, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45550479, Length=138, Percent_Identity=36.231884057971, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221330478, Length=138, Percent_Identity=36.231884057971, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45551135, Length=138, Percent_Identity=36.231884057971, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28573593, Length=138, Percent_Identity=36.231884057971, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281363919, Length=138, Percent_Identity=36.231884057971, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221330476, Length=138, Percent_Identity=36.231884057971, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24650843, Length=174, Percent_Identity=30.4597701149425, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24581260, Length=101, Percent_Identity=39.6039603960396, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24581258, Length=101, Percent_Identity=39.6039603960396, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI28571867, Length=128, Percent_Identity=37.5, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28571865, Length=128, Percent_Identity=37.5, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI19921030, Length=147, Percent_Identity=37.4149659863946, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683
- InterPro:   IPR007685 [H]

Pfam domain/function: PF00023 Ank; PF04607 RelA_SpoT [H]

EC number: NA

Molecular weight: Translated: 25150; Mature: 25150

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MKSIKHLSKQRTMGARLRALALALAGGLGALAAAPAHAESLDGIVKAVKFDDIKDISKQL
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHH
KNGLDPNTIAPNGDPLLVIAAREKSDQVAAALAAAPNVELDKEDKAGENALMLAALNGDL
HCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCC
PLVKLLVDKGAEVSKKGWSPLHYAATNGNDEVVKYLVDKSAYIDAASPNGTTPLMMAARG
HHHHHHHHCCCCCHHCCCCCEEEEECCCCHHHHHHHHCCCCEEECCCCCCCCEEEEEEEC
NHGSTVTLLLDQGADPALKNQLGITALDFAKHYNAPDATAILSKRTVRIGDAPAPNAQKS
CCCCEEEEEEECCCCHHHHHHCCCCHHHHHHHCCCCCHHHHHHCCEEEECCCCCCCCCCC
AK
CC
>Mature Secondary Structure
MKSIKHLSKQRTMGARLRALALALAGGLGALAAAPAHAESLDGIVKAVKFDDIKDISKQL
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHH
KNGLDPNTIAPNGDPLLVIAAREKSDQVAAALAAAPNVELDKEDKAGENALMLAALNGDL
HCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCC
PLVKLLVDKGAEVSKKGWSPLHYAATNGNDEVVKYLVDKSAYIDAASPNGTTPLMMAARG
HHHHHHHHCCCCCHHCCCCCEEEEECCCCHHHHHHHHCCCCEEECCCCCCCCEEEEEEEC
NHGSTVTLLLDQGADPALKNQLGITALDFAKHYNAPDATAILSKRTVRIGDAPAPNAQKS
CCCCEEEEEEECCCCHHHHHHCCCCHHHHHHHCCCCCHHHHHHCCEEEECCCCCCCCCCC
AK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA