Click here to switch to the map view.

The map label for this gene is ywbI [H]

Identifier: 126451850

GI number: 126451850

Start: 1132085

End: 1133047

Strand: Reverse

Name: ywbI [H]

Synonym: BURPS1106A_1152

Alternate gene names: 126451850

Gene position: 1133047-1132085 (Counterclockwise)

Preceding gene: 126454580

Following gene: 126453249

Centisome position: 28.41

GC content: 66.67

Gene sequence:

>963_bases
ATGCGCGCCGCCGCCGTCCGCTTCCTGAACGACCGTCTCGACTGGAACCTGTTGCGCACCTTCCTCGTCATCATGCAGGA
GCGCAGCGTGAGCCGCGCGGCCGCGCGGCTGCACGTCACGCAGCCGGCCGTGAGCCAGGCGCTCAAGCGGCTCGAGGAAA
CGCTCGGGCACACGCTGATCCGCCGCCGCGGCCCGCACTTCGAGCCGACGCAGGCGGGCGCCGAGGTGTACCGGATCGCG
AGCGACATCTACGGCACGATCTCGCGCCTGGACACCGAGCTCGACGACGCGGCGGCCGACCTGACGGGCACGATCCGGCT
GCTGTCGGTGAGCCGCATCGAATCGGGCGTCTACGATTTCTTTCTCGCCGACTTTCATCGGCAATATCCGCGCGTCGATC
TGCAGATCGAGGTGATGCGCTCCTCCGACATCATTTCGTCGCTGCTGCAGAAGACCGCGACGGCGGGCCTGAGCCTCTGC
CGCAATCCGGTCGACAAGCTCGCCCGCGCATCGTTCCTGCGGCAGCGCTATGCGATCTACTGCGGCCGGCACCATCGGCT
GTTCGGCCAGACGCAACTGACGATGAACGATCTGCTCGCGGAGAACTTCGTATCGTTCACGAGCGACCAGATCGGCGACA
GCCTGTCGCCGCTCACCGTGTTCCGCGACCAGAAGGGCTTCACGGGGCGCATCGTCGCGGCATCGCCGAGCCTCGACGAA
GTGCGTCGGCTCATCTTCGCGGGCTACGGGATCGGCTGCCTGCCCGAGCACATCGTGCGCGACGATCTCGCCCGTCAGCG
GCTCTGGCGACTGCCGCCGGACGAGGGGCTCATCGACGTCGACATCCACCTGCTGTGGCACCGGGAACGGAAAATGAACG
CGGCCGAACTCGCGTTCCTCGAAGGCTTCGAACGCGCGATGCAGCGCTACTCGTTCGACGAACGGCTGGCGATCAATCCT
TGA

Upstream 100 bases:

>100_bases
CGTTTTATCGCCGTCCATTAACTATTAGTCAAATTTCGACTTATTATTCACGGCATAACTTATATTAATGTCGATGTCGA
TTCGCCGGAGACCCCTCGCC

Downstream 100 bases:

>100_bases
CGCCTTGACGCGCCCGGGCGTGCAGGCGCGTCGCGGCCGTCGCGCCGGGCGCGAACCGGTCGCGCCGACCGGCCAGGCCC
ACCGGCCGTGCCTCGAGCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MRAAAVRFLNDRLDWNLLRTFLVIMQERSVSRAAARLHVTQPAVSQALKRLEETLGHTLIRRRGPHFEPTQAGAEVYRIA
SDIYGTISRLDTELDDAAADLTGTIRLLSVSRIESGVYDFFLADFHRQYPRVDLQIEVMRSSDIISSLLQKTATAGLSLC
RNPVDKLARASFLRQRYAIYCGRHHRLFGQTQLTMNDLLAENFVSFTSDQIGDSLSPLTVFRDQKGFTGRIVAASPSLDE
VRRLIFAGYGIGCLPEHIVRDDLARQRLWRLPPDEGLIDVDIHLLWHRERKMNAAELAFLEGFERAMQRYSFDERLAINP

Sequences:

>Translated_320_residues
MRAAAVRFLNDRLDWNLLRTFLVIMQERSVSRAAARLHVTQPAVSQALKRLEETLGHTLIRRRGPHFEPTQAGAEVYRIA
SDIYGTISRLDTELDDAAADLTGTIRLLSVSRIESGVYDFFLADFHRQYPRVDLQIEVMRSSDIISSLLQKTATAGLSLC
RNPVDKLARASFLRQRYAIYCGRHHRLFGQTQLTMNDLLAENFVSFTSDQIGDSLSPLTVFRDQKGFTGRIVAASPSLDE
VRRLIFAGYGIGCLPEHIVRDDLARQRLWRLPPDEGLIDVDIHLLWHRERKMNAAELAFLEGFERAMQRYSFDERLAINP
>Mature_320_residues
MRAAAVRFLNDRLDWNLLRTFLVIMQERSVSRAAARLHVTQPAVSQALKRLEETLGHTLIRRRGPHFEPTQAGAEVYRIA
SDIYGTISRLDTELDDAAADLTGTIRLLSVSRIESGVYDFFLADFHRQYPRVDLQIEVMRSSDIISSLLQKTATAGLSLC
RNPVDKLARASFLRQRYAIYCGRHHRLFGQTQLTMNDLLAENFVSFTSDQIGDSLSPLTVFRDQKGFTGRIVAASPSLDE
VRRLIFAGYGIGCLPEHIVRDDLARQRLWRLPPDEGLIDVDIHLLWHRERKMNAAELAFLEGFERAMQRYSFDERLAINP

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=282, Percent_Identity=27.6595744680851, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787601, Length=290, Percent_Identity=23.1034482758621, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787879, Length=297, Percent_Identity=26.5993265993266, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787589, Length=121, Percent_Identity=32.2314049586777, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787530, Length=298, Percent_Identity=23.1543624161074, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=23.6933797909408, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36514; Mature: 36514

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAAAVRFLNDRLDWNLLRTFLVIMQERSVSRAAARLHVTQPAVSQALKRLEETLGHTLI
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
RRRGPHFEPTQAGAEVYRIASDIYGTISRLDTELDDAAADLTGTIRLLSVSRIESGVYDF
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLADFHRQYPRVDLQIEVMRSSDIISSLLQKTATAGLSLCRNPVDKLARASFLRQRYAIY
HHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CGRHHRLFGQTQLTMNDLLAENFVSFTSDQIGDSLSPLTVFRDQKGFTGRIVAASPSLDE
HCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCEEEEECCCCHHH
VRRLIFAGYGIGCLPEHIVRDDLARQRLWRLPPDEGLIDVDIHLLWHRERKMNAAELAFL
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEHHHHCCHHHHHHH
EGFERAMQRYSFDERLAINP
HHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRAAAVRFLNDRLDWNLLRTFLVIMQERSVSRAAARLHVTQPAVSQALKRLEETLGHTLI
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
RRRGPHFEPTQAGAEVYRIASDIYGTISRLDTELDDAAADLTGTIRLLSVSRIESGVYDF
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLADFHRQYPRVDLQIEVMRSSDIISSLLQKTATAGLSLCRNPVDKLARASFLRQRYAIY
HHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CGRHHRLFGQTQLTMNDLLAENFVSFTSDQIGDSLSPLTVFRDQKGFTGRIVAASPSLDE
HCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCEEEEECCCCHHH
VRRLIFAGYGIGCLPEHIVRDDLARQRLWRLPPDEGLIDVDIHLLWHRERKMNAAELAFL
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEHHHHCCHHHHHHH
EGFERAMQRYSFDERLAINP
HHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]