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The map label for this gene is yahB [H]

Identifier: 126453249

GI number: 126453249

Start: 1130431

End: 1131315

Strand: Reverse

Name: yahB [H]

Synonym: BURPS1106A_1150

Alternate gene names: 126453249

Gene position: 1131315-1130431 (Counterclockwise)

Preceding gene: 126451850

Following gene: 126453985

Centisome position: 28.36

GC content: 71.19

Gene sequence:

>885_bases
ATGCGCCACTCTCCAGAAGCGCTGCTCGCGTTCGCCGAGGCCGCGAACCTCGGCTCGTTCTCGGCGGCCGCGCGCAAGCT
CGGCAAGCGGCAATCGACGGTCAGCGAGGCGATCGCGAACCTCGAGATCGATCTCGGCGTCACGCTGTTCGACCGCTCGA
CTCGCCAGCCGACACTGACCGACGCCGCCCGTGCGCTGCTGCCCGAAGTCCAGCGCGTCCTGGAGGCGAGCGAGGCGATC
GATCAGGTCGCCGCGCGTCTGGCGGGCGGCGAGGAAGCGCGCCTCACGCTCGTCGTGTCGGATACCTATCAGTCGAGCCG
ATACGAGGAAACGCTCGCGGCGCTGGACCGCCGTTTTCCGACGCTCGAATTCGAATGCCAGATCGCCGAGCACGACGACG
TACTCGACCTGATCCAGCAAGGCCGCGCGCAGCTCGGGCTGATGACGGCGCGCAGCACCTACCCGCCCGACATCGGCGCG
GCGACGATCGCCGAGCGCTCGGAGATCGGGCTGTACGTCGGCCCGCAGCACGCGCTCGCCGCGTACGGCGATGCCGAGGT
GCCGCTCGCCGCGCTGCACGACACACGCGAGCTGCGCCTGAACACCTACGTCGCGCCGCGCGGCGAGCGGGTCGAAACGG
GGCTCGTCGCGGGCCGGCGCTGCTGGCTGGCGCCGAGCTATCTGCAGTTGCTGGAAATGGCGGTGGCAGGCTTCGGCTGG
GCGGAGCTGCCGCGCTGGATGGTCGAGCACTTCGCCCGCGAACGGCTCGTCGAGCTCAATGCGCGCGGCTGGCCGCGGCG
CGTGCCGGTGGATGCTGTGTGGTCGCGCGGGCAGCCGCTCGGGCCGGCCGGCTCATGGCTGCTGGAGACGATGCTCGCCG
CGTGA

Upstream 100 bases:

>100_bases
GCTCCATCAATTAACGAGACGGAGCCATTTTCATCGGATTAACCGTAGCCATCCAGTTTGTTATGATCGGTTTTTCCGAT
ACATCAAAGGAGCATTCGCG

Downstream 100 bases:

>100_bases
GGGGCTTGAGGGGCTTGAGGGACTTGAGGGACTTGAGGGACTTGAGGGGCTCGCGGCGCTCGAGGCGAGGCGAGGCACGG
CGCGCGGCGCGCGGCGCTTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MRHSPEALLAFAEAANLGSFSAAARKLGKRQSTVSEAIANLEIDLGVTLFDRSTRQPTLTDAARALLPEVQRVLEASEAI
DQVAARLAGGEEARLTLVVSDTYQSSRYEETLAALDRRFPTLEFECQIAEHDDVLDLIQQGRAQLGLMTARSTYPPDIGA
ATIAERSEIGLYVGPQHALAAYGDAEVPLAALHDTRELRLNTYVAPRGERVETGLVAGRRCWLAPSYLQLLEMAVAGFGW
AELPRWMVEHFARERLVELNARGWPRRVPVDAVWSRGQPLGPAGSWLLETMLAA

Sequences:

>Translated_294_residues
MRHSPEALLAFAEAANLGSFSAAARKLGKRQSTVSEAIANLEIDLGVTLFDRSTRQPTLTDAARALLPEVQRVLEASEAI
DQVAARLAGGEEARLTLVVSDTYQSSRYEETLAALDRRFPTLEFECQIAEHDDVLDLIQQGRAQLGLMTARSTYPPDIGA
ATIAERSEIGLYVGPQHALAAYGDAEVPLAALHDTRELRLNTYVAPRGERVETGLVAGRRCWLAPSYLQLLEMAVAGFGW
AELPRWMVEHFARERLVELNARGWPRRVPVDAVWSRGQPLGPAGSWLLETMLAA
>Mature_294_residues
MRHSPEALLAFAEAANLGSFSAAARKLGKRQSTVSEAIANLEIDLGVTLFDRSTRQPTLTDAARALLPEVQRVLEASEAI
DQVAARLAGGEEARLTLVVSDTYQSSRYEETLAALDRRFPTLEFECQIAEHDDVLDLIQQGRAQLGLMTARSTYPPDIGA
ATIAERSEIGLYVGPQHALAAYGDAEVPLAALHDTRELRLNTYVAPRGERVETGLVAGRRCWLAPSYLQLLEMAVAGFGW
AELPRWMVEHFARERLVELNARGWPRRVPVDAVWSRGQPLGPAGSWLLETMLAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786508, Length=275, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786713, Length=123, Percent_Identity=34.9593495934959, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788748, Length=148, Percent_Identity=29.0540540540541, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI87082024, Length=282, Percent_Identity=25.531914893617, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI157672245, Length=197, Percent_Identity=28.9340101522843, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32255; Mature: 32255

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHSPEALLAFAEAANLGSFSAAARKLGKRQSTVSEAIANLEIDLGVTLFDRSTRQPTLT
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCEEEECCCCCCCCHH
DAARALLPEVQRVLEASEAIDQVAARLAGGEEARLTLVVSDTYQSSRYEETLAALDRRFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCC
TLEFECQIAEHDDVLDLIQQGRAQLGLMTARSTYPPDIGAATIAERSEIGLYVGPQHALA
CEEEEEEECCCCHHHHHHHHCHHHEEEEECCCCCCCCCCHHHHHHHHCCCEEECCHHHHH
AYGDAEVPLAALHDTRELRLNTYVAPRGERVETGLVAGRRCWLAPSYLQLLEMAVAGFGW
HCCCCCCCHHHHHCCHHHEEEEEECCCCCCHHHHHHHCCHHCCCHHHHHHHHHHHHCCCH
AELPRWMVEHFARERLVELNARGWPRRVPVDAVWSRGQPLGPAGSWLLETMLAA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MRHSPEALLAFAEAANLGSFSAAARKLGKRQSTVSEAIANLEIDLGVTLFDRSTRQPTLT
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCEEEECCCCCCCCHH
DAARALLPEVQRVLEASEAIDQVAARLAGGEEARLTLVVSDTYQSSRYEETLAALDRRFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCC
TLEFECQIAEHDDVLDLIQQGRAQLGLMTARSTYPPDIGAATIAERSEIGLYVGPQHALA
CEEEEEEECCCCHHHHHHHHCHHHEEEEECCCCCCCCCCHHHHHHHHCCCEEECCHHHHH
AYGDAEVPLAALHDTRELRLNTYVAPRGERVETGLVAGRRCWLAPSYLQLLEMAVAGFGW
HCCCCCCCHHHHHCCHHHEEEEEECCCCCCHHHHHHHCCHHCCCHHHHHHHHHHHHCCCH
AELPRWMVEHFARERLVELNARGWPRRVPVDAVWSRGQPLGPAGSWLLETMLAA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]