Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 126451773

GI number: 126451773

Start: 3257350

End: 3258048

Strand: Direct

Name: yggS [C]

Synonym: BURPS1106A_3333

Alternate gene names: 126451773

Gene position: 3257350-3258048 (Clockwise)

Preceding gene: 126452136

Following gene: 126454190

Centisome position: 81.67

GC content: 71.82

Gene sequence:

>699_bases
ATGTCCGATCTCGCCGCCCGCCTCGCCTCCGTTCATCGCCGCATCGACGAAGCCGCCCGCGCGGCCGGCCGCGCGCCCGG
CTCGGTCGCGCTGCTCGCGGTGTCGAAGACGTTTCCCGCCGACGCGGTGCGCGCCGCATACGCGGCCGGCCAGCGCGCGT
TCGGCGAGAACTACGTGCAGGAATCGATCGACAAGATCAGCACGCTCGCCGACCTGCGCGCCGAGCTCGAGTGGCATTTC
ATCGGCCCGCTGCAGTCGAACAAGACGCGCCCCGTCGCCGAGCGCTTCGACTGGGTGCATACGATCGACCGGCTGAAGAT
CGCGCAGCGCCTGTCCGAGCAGCGCCCCGCGCACCTGCCGCCGTTGAACGTCTGCGTGCAGGTGAACATCAGCGGCGAGG
CGTCGAAGAGCGGCGTCGCGCCGGCGGATGCGGCCGGGCTCGCGCGCGCGGTCGCCGCGCTGCCCGCGCTGCGGCTGCGC
GGCCTGATGGCGATTCCCGAACCCGAAACCGACCCCGAAGCGAAACGCGCGCCGCATCGCGCGCTGCATGCGCTCTTCGA
GCAGTTGCGCGCGGGCGGGCTCGCGCTCGATACGCTGTCGATGGGCATGTCGGACGATCTCGAGGCCGCGGTCGCCGAAG
GCGCGACAATCGTGCGTATCGGCACCGCGATCTTCGGCGCGCGCGACTACGCGCACTGA

Upstream 100 bases:

>100_bases
CGGTTGTCCGTATAATTCCCGCATCCGTCGCGCGCCGCGGCACGCCGCCCGGCGCGCGTCTCACATACGTTTCGTTCGCC
TCGGTTTCGTTCGCTCCGCC

Downstream 100 bases:

>100_bases
CCCCTCCCTTCTCTCTCGACCCTCTCACTCATCATGAAAATCGCATTCATCGGCGGCGGCAACATGGCGGCCGCGTTGAT
CGGCGGACTCGTCAAGCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSDLAARLASVHRRIDEAARAAGRAPGSVALLAVSKTFPADAVRAAYAAGQRAFGENYVQESIDKISTLADLRAELEWHF
IGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLPPLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLR
GLMAIPEPETDPEAKRAPHRALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDYAH

Sequences:

>Translated_232_residues
MSDLAARLASVHRRIDEAARAAGRAPGSVALLAVSKTFPADAVRAAYAAGQRAFGENYVQESIDKISTLADLRAELEWHF
IGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLPPLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLR
GLMAIPEPETDPEAKRAPHRALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDYAH
>Mature_231_residues
SDLAARLASVHRRIDEAARAAGRAPGSVALLAVSKTFPADAVRAAYAAGQRAFGENYVQESIDKISTLADLRAELEWHFI
GPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLPPLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRG
LMAIPEPETDPEAKRAPHRALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDYAH

Specific function: Perhaps involved in proline biosynthesis [H]

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=213, Percent_Identity=43.1924882629108, Blast_Score=134, Evalue=8e-32,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=59.9137931034483, Blast_Score=267, Evalue=6e-73,
Organism=Caenorhabditis elegans, GI17533025, Length=230, Percent_Identity=37.3913043478261, Blast_Score=131, Evalue=3e-31,
Organism=Saccharomyces cerevisiae, GI6319435, Length=242, Percent_Identity=36.3636363636364, Blast_Score=121, Evalue=8e-29,
Organism=Drosophila melanogaster, GI45550861, Length=248, Percent_Identity=38.3064516129032, Blast_Score=136, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24734; Mature: 24603

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLAARLASVHRRIDEAARAAGRAPGSVALLAVSKTFPADAVRAAYAAGQRAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP
HHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR
CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
ALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDYAH
HHHHHHHHHHHCCEEHHHHHCCCCCHHHHHHHCCCEEEEEHHHHHCCHHCCC
>Mature Secondary Structure 
SDLAARLASVHRRIDEAARAAGRAPGSVALLAVSKTFPADAVRAAYAAGQRAFGENYVQ
CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP
HHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR
CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
ALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDYAH
HHHHHHHHHHHCCEEHHHHHCCCCCHHHHHHHCCCEEEEEHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1676385; 10984043; 2107123 [H]