Click here to switch to the map view.

The map label for this gene is ybiR [H]

Identifier: 126451626

GI number: 126451626

Start: 3955809

End: 3956942

Strand: Reverse

Name: ybiR [H]

Synonym: BURPS1106A_4051

Alternate gene names: 126451626

Gene position: 3956942-3955809 (Counterclockwise)

Preceding gene: 126452714

Following gene: 126454038

Centisome position: 99.21

GC content: 67.02

Gene sequence:

>1134_bases
GTGTCGAATTCGGTCGTCGGGCGCGCGCCCGCGCGGATCATCGCGTTCGTCCGGCACGAGCCGGTTCTCTCGATTCTCGT
CGCGGCGCTGATTGCGCTGCAGGCCGTGCATTCTCTATCGGCAATCGCGCTCGTGCGGCTCGTCGACTGGCAGACCGTCG
CGACGCTCGCCGGTCTGCTGATGCTCACGAAGGCGCTGGAGCTGTCGGGCTTCCTGATGTGGCTCGCGCACCGCATCGTC
CATCGCGTGCGCTCCGAGCGTGCGCTTGCCGCGCTGCTCGTCGTGTTCGCGGCGGCGTTGTCCGTATGGCTCACGAACGA
CGTGGCGCTTTTCGTCGTGATTCCGCTCGTACTGTCGCTGCGCGAGCTGACGCCGTTGCCGTTCAAGCGCCTCGTGATCT
ACATCGCGCTCGCGGTGAACGCAGGTGCGATCGCGACGCCGCTCGGCAATCCGCAAAATCTCTTTCTATGGCAATTGAGC
GGCGTCTCGTTCGGCCGTTTCGTGATCGCGCTCGGGCCGCTCGCGCTCGTGCTGATGGCGCTGCTGCTCGCGATGGTCGT
CTTTGCGTTCGACGGCCGGCCGCTCGATCTGTCGAGGGACTCCACCGAGCGGCCGGTCGATCGTGCGCAGGCGTTCGCGA
CGGTCGCGATGTTCGCCGGCTTCGTGCTGCTCGCGGACGCGCATCACGCGCTTGCCGGCGTGCTCGCGGTGGCGGCGGTC
TTTCTGATCGTCCGGCGCGACGCGGTGCTGAAGATCGACTGGCTTCTGCTGCTGATCTTCGTGCTGATGTTCATCGTGTT
GCGCAGCGCGGCATCGCTGCCGGCCGTCCATCAGGCAATCGCCGGCATCGGTCTCGACACGCCGCTGCGCGCGTATGCGG
CGGGCGCGCTGCTGTCGCAGATCATCAGCAACGTGCCGGCCGCGATCCTCCTGTCGGAGTTCACGCATGACTGGCGCGCG
CTCGCGTTCGGCGTGAGCGTCGGCGGCTTCGGCATCGCGTTCGGTTCGCTCGCCAACCTGATCGCCATCCGGCTGTCCCG
CGCGCGCGGGATGTGGTTGCCGTTCCATCTCGTGAGCATCCCGTTCGGCATCGCGAGCGCCGTGCTCGGCGCGCTGCTGC
TGCATTATTTTTGA

Upstream 100 bases:

>100_bases
CGTCGCGGGCGGGGCCAACTGACGATCGATTTCGGCGACCTCGACGCGCTCGAAGGCATCCTCGCGCGGCTGCGCGGCAA
CGTTGCCGCTTGACCGCGCC

Downstream 100 bases:

>100_bases
GCAGCGGCGCGCACCGGAACGGGGCAGGGCAACGGGCGTTCGACGCTCGCCGAGCGATCGAAAACACACACCTTACAACT
GTCATCGGACGCTAGAAATT

Product: transporter, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MSNSVVGRAPARIIAFVRHEPVLSILVAALIALQAVHSLSAIALVRLVDWQTVATLAGLLMLTKALELSGFLMWLAHRIV
HRVRSERALAALLVVFAAALSVWLTNDVALFVVIPLVLSLRELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLFLWQLS
GVSFGRFVIALGPLALVLMALLLAMVVFAFDGRPLDLSRDSTERPVDRAQAFATVAMFAGFVLLADAHHALAGVLAVAAV
FLIVRRDAVLKIDWLLLLIFVLMFIVLRSAASLPAVHQAIAGIGLDTPLRAYAAGALLSQIISNVPAAILLSEFTHDWRA
LAFGVSVGGFGIAFGSLANLIAIRLSRARGMWLPFHLVSIPFGIASAVLGALLLHYF

Sequences:

>Translated_377_residues
MSNSVVGRAPARIIAFVRHEPVLSILVAALIALQAVHSLSAIALVRLVDWQTVATLAGLLMLTKALELSGFLMWLAHRIV
HRVRSERALAALLVVFAAALSVWLTNDVALFVVIPLVLSLRELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLFLWQLS
GVSFGRFVIALGPLALVLMALLLAMVVFAFDGRPLDLSRDSTERPVDRAQAFATVAMFAGFVLLADAHHALAGVLAVAAV
FLIVRRDAVLKIDWLLLLIFVLMFIVLRSAASLPAVHQAIAGIGLDTPLRAYAAGALLSQIISNVPAAILLSEFTHDWRA
LAFGVSVGGFGIAFGSLANLIAIRLSRARGMWLPFHLVSIPFGIASAVLGALLLHYF
>Mature_376_residues
SNSVVGRAPARIIAFVRHEPVLSILVAALIALQAVHSLSAIALVRLVDWQTVATLAGLLMLTKALELSGFLMWLAHRIVH
RVRSERALAALLVVFAAALSVWLTNDVALFVVIPLVLSLRELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLFLWQLSG
VSFGRFVIALGPLALVLMALLLAMVVFAFDGRPLDLSRDSTERPVDRAQAFATVAMFAGFVLLADAHHALAGVLAVAAVF
LIVRRDAVLKIDWLLLLIFVLMFIVLRSAASLPAVHQAIAGIGLDTPLRAYAAGALLSQIISNVPAAILLSEFTHDWRAL
AFGVSVGGFGIAFGSLANLIAIRLSRARGMWLPFHLVSIPFGIASAVLGALLLHYF

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=327, Percent_Identity=40.3669724770642, Blast_Score=230, Evalue=1e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 40349; Mature: 40218

Theoretical pI: Translated: 11.59; Mature: 11.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSVVGRAPARIIAFVRHEPVLSILVAALIALQAVHSLSAIALVRLVDWQTVATLAGLL
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLTKALELSGFLMWLAHRIVHRVRSERALAALLVVFAAALSVWLTNDVALFVVIPLVLSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
RELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLFLWQLSGVSFGRFVIALGPLALVLMA
HHCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
LLLAMVVFAFDGRPLDLSRDSTERPVDRAQAFATVAMFAGFVLLADAHHALAGVLAVAAV
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLIVRRDAVLKIDWLLLLIFVLMFIVLRSAASLPAVHQAIAGIGLDTPLRAYAAGALLSQ
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
IISNVPAAILLSEFTHDWRALAFGVSVGGFGIAFGSLANLIAIRLSRARGMWLPFHLVSI
HHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
PFGIASAVLGALLLHYF
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNSVVGRAPARIIAFVRHEPVLSILVAALIALQAVHSLSAIALVRLVDWQTVATLAGLL
CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLTKALELSGFLMWLAHRIVHRVRSERALAALLVVFAAALSVWLTNDVALFVVIPLVLSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
RELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLFLWQLSGVSFGRFVIALGPLALVLMA
HHCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
LLLAMVVFAFDGRPLDLSRDSTERPVDRAQAFATVAMFAGFVLLADAHHALAGVLAVAAV
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLIVRRDAVLKIDWLLLLIFVLMFIVLRSAASLPAVHQAIAGIGLDTPLRAYAAGALLSQ
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
IISNVPAAILLSEFTHDWRALAFGVSVGGFGIAFGSLANLIAIRLSRARGMWLPFHLVSI
HHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
PFGIASAVLGALLLHYF
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]