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The map label for this gene is yecD [H]

Identifier: 126451568

GI number: 126451568

Start: 3512889

End: 3513602

Strand: Reverse

Name: yecD [H]

Synonym: BURPS1106A_3608

Alternate gene names: 126451568

Gene position: 3513602-3512889 (Counterclockwise)

Preceding gene: 126454960

Following gene: 126452681

Centisome position: 88.09

GC content: 71.71

Gene sequence:

>714_bases
GTGGCTCGACGCGCGCACGCAACCGATCTGACGGGCGCGCGGGCGCCGGCGGCGACGAGCGTCGCCGGTTCGGCGGCGTC
GACGCCGACGCCGATGTCGGTGCAGGTGTCGATGCCGGCGGCCGGGGGCGAATGGCTGAACGATGAAAACGGAGGGCGTT
GCATGGCGAGGGCGGCGGTGATCGTGGTGGACATGCAGCGCGGGCTGCTGCAGCGGGCGAAGCCCGCGCATCGGCTCGAC
GAGGTCGTCGCGGGCATCAACCGGCTGACGGCGGCGGCGCGCGCGGCGGGCGCGCCCGTCTGTTTCGTGCAGCACGACGG
CGGCGCGGACGACGACGTCGTGCCCGGCACGCCCGGTTGGCGGCTGCACGCGGAGCTCACGTGCGCCGACGCCGACTGGC
GAATCCGCAAGCGCGCAAGCGATGCGTTCCACGGCACGCCGCTTGCCGCGCAACTTGCCGCGCACGGCGTTGACGCGGTC
GTGATCTGCGGCTACGCGTCGGAATTCTGCGTCGATTCGGCGGCGCGCCGCGCGGCGCTCCTCGGCTATCGAACGACGGT
CGTCTCCGATCTGCACACGACGAACGATCGCGCTCACCTGAGCGCGGCGCAAATCGTCGCGCATCACAATTTCATCTGGA
GCCACTGTTCGTTCTCGGGCAACGGCGTTGCGCCGCGGCCGCTCGACGAGGTGATCGCCGCGGAGCTCGCATGA

Upstream 100 bases:

>100_bases
TGCCCGCGCTCCTCGACGACGTCGAGCGCGCGTGGCTGAACGCGTATCACGCGACGGTGCGCGAGCGGGTCGGCAAGCAC
GTGTCGGGCGACGCGAGGGC

Downstream 100 bases:

>100_bases
CCGTCAAGGCAGTCGTATTCGATTTCGGCGGCGTGCTGATCGACTGGAGCCCCGAGTATCTGTACCGGAAACTGATTCCC
GATGAAGCCGAGCGGCGCTG

Product: isochorismatase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MARRAHATDLTGARAPAATSVAGSAASTPTPMSVQVSMPAAGGEWLNDENGGRCMARAAVIVVDMQRGLLQRAKPAHRLD
EVVAGINRLTAAARAAGAPVCFVQHDGGADDDVVPGTPGWRLHAELTCADADWRIRKRASDAFHGTPLAAQLAAHGVDAV
VICGYASEFCVDSAARRAALLGYRTTVVSDLHTTNDRAHLSAAQIVAHHNFIWSHCSFSGNGVAPRPLDEVIAAELA

Sequences:

>Translated_237_residues
MARRAHATDLTGARAPAATSVAGSAASTPTPMSVQVSMPAAGGEWLNDENGGRCMARAAVIVVDMQRGLLQRAKPAHRLD
EVVAGINRLTAAARAAGAPVCFVQHDGGADDDVVPGTPGWRLHAELTCADADWRIRKRASDAFHGTPLAAQLAAHGVDAV
VICGYASEFCVDSAARRAALLGYRTTVVSDLHTTNDRAHLSAAQIVAHHNFIWSHCSFSGNGVAPRPLDEVIAAELA
>Mature_236_residues
ARRAHATDLTGARAPAATSVAGSAASTPTPMSVQVSMPAAGGEWLNDENGGRCMARAAVIVVDMQRGLLQRAKPAHRLDE
VVAGINRLTAAARAAGAPVCFVQHDGGADDDVVPGTPGWRLHAELTCADADWRIRKRASDAFHGTPLAAQLAAHGVDAVV
ICGYASEFCVDSAARRAALLGYRTTVVSDLHTTNDRAHLSAAQIVAHHNFIWSHCSFSGNGVAPRPLDEVIAAELA

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

Organism=Escherichia coli, GI87081992, Length=146, Percent_Identity=35.6164383561644, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 24726; Mature: 24595

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRAHATDLTGARAPAATSVAGSAASTPTPMSVQVSMPAAGGEWLNDENGGRCMARAAV
CCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEHEE
IVVDMQRGLLQRAKPAHRLDEVVAGINRLTAAARAAGAPVCFVQHDGGADDDVVPGTPGW
EEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCE
RLHAELTCADADWRIRKRASDAFHGTPLAAQLAAHGVDAVVICGYASEFCVDSAARRAAL
EEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH
LGYRTTVVSDLHTTNDRAHLSAAQIVAHHNFIWSHCSFSGNGVAPRPLDEVIAAELA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
ARRAHATDLTGARAPAATSVAGSAASTPTPMSVQVSMPAAGGEWLNDENGGRCMARAAV
CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEHEE
IVVDMQRGLLQRAKPAHRLDEVVAGINRLTAAARAAGAPVCFVQHDGGADDDVVPGTPGW
EEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCE
RLHAELTCADADWRIRKRASDAFHGTPLAAQLAAHGVDAVVICGYASEFCVDSAARRAAL
EEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH
LGYRTTVVSDLHTTNDRAHLSAAQIVAHHNFIWSHCSFSGNGVAPRPLDEVIAAELA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]