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The map label for this gene is yfdE [H]

Identifier: 126451519

GI number: 126451519

Start: 72919

End: 74052

Strand: Direct

Name: yfdE [H]

Synonym: BURPS1106A_0075

Alternate gene names: 126451519

Gene position: 72919-74052 (Clockwise)

Preceding gene: 126455425

Following gene: 126452333

Centisome position: 1.83

GC content: 71.96

Gene sequence:

>1134_bases
ATGGGCCCTTTGCACGGAATCCGAATCGTCGAAATCGCCGGAATCGGCCCGGCGCCGTTCTGCGGGATGCTGCTCGCCGA
CATGGGCGCGGACGTGATCCTCGTCGAGCGCACGGCCGGCCGCGACGGCGATCCGCTCGACCTCGGCCGCCGCGCGATCT
TCAATCGCGGCAAGCGCTCGCTCGCGCTCGACCTGAAGCAGCCGGAGGCGGTGGGCGCGGTGCTGCGGCTCGTCGAGCAT
GCCGACGCGCTGATCGAAGGCATGCGCCCGGGCGTGATGGAGCGGCTCGGGCTCGGCCCCGACACGTGCTTCGCGCGTAA
TCCGAAACTCGTCTACGGGCGGATGACGGGCTGGGGGCAGGACGGCCCGCTCGCGCACGCGGCGGGGCACGACATCAACT
ATATCGGGCTGTCCGGCGCACTGTGGTACGCGGGGCAGCCGGGCGACGCGCCGTTTGCGCCGCCGACGCTCGTCGGCGAT
CTCGGCGGCGGCGCGCTGTATCTCGCGATGGGCGTGCTCGCGGGTATCGTCGATGCGCGCCTGCGCGGCAAGGGGCAAAT
CGTCGATGCGGCGATCGTCGACGGCAGCGCGAACCTGATGAACCTGCTGCTGTCGATTCACGCGGCGGGCTTCATGCCGA
TGGCGCGCGGCCAGGGGCTGCTCGACGGCCCGCACTGGTACGGCAGCTATCGCTGCGCGTGCGGCGGCTACGTCAGCGTC
GGCGCGCTCGAGCCGCAGTTCTACGCGCTGCTCGTCGACAAGCTCGGCCTTGCCGACGACGACGATTTTCGGAACCCGTA
CGACGCCAGCCGCTGGCCCCGGCTGCGCGAGCGGCTCGCGGAGATTTTCGCGAGCCGGCCGCGCGCGCATTGGGTCGAAC
TGATGGAGGGGACCGACGCCTGTTTCGCGCCGGTGCTGAGCCCGGCCGAGGCGCAGTCGCATCCGCATCTGGCGGCGCGC
GGCGTGTATGCGCAGCGCGACGGCATACTGCAGGCGGCGCCGGCGCCGCGGTTCTCCGGCTCGCCGAACGCGCAGCCCGG
CGCGGTGCCGAAGCGCGGCGCGGACAGCGCGGCGATCCTGCGCGAAGCGGGGTTCGCGGAAGACGAGATCGCGGCGCTCG
CCGCGAAAGAGTGA

Upstream 100 bases:

>100_bases
GCCCGGCACCGCAGGACCGCCGGACCGCAATCATCGCGGCCGCGCGCCGCAACTCGGCGTCGCGCGGAACCGAACGCATC
GAACCTCACGGGGAGCGGGC

Downstream 100 bases:

>100_bases
GCGGCCGGGCGCGCGAAGCCGCCTCGCCCGCTCGATCCGCTGCGCTCGGCGCGTTGCGCCGAGGCGCGCGCCCCGCTCAT
TTCCCGCCGACGGTCGGCAG

Product: CAIB/BAIF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MGPLHGIRIVEIAGIGPAPFCGMLLADMGADVILVERTAGRDGDPLDLGRRAIFNRGKRSLALDLKQPEAVGAVLRLVEH
ADALIEGMRPGVMERLGLGPDTCFARNPKLVYGRMTGWGQDGPLAHAAGHDINYIGLSGALWYAGQPGDAPFAPPTLVGD
LGGGALYLAMGVLAGIVDARLRGKGQIVDAAIVDGSANLMNLLLSIHAAGFMPMARGQGLLDGPHWYGSYRCACGGYVSV
GALEPQFYALLVDKLGLADDDDFRNPYDASRWPRLRERLAEIFASRPRAHWVELMEGTDACFAPVLSPAEAQSHPHLAAR
GVYAQRDGILQAAPAPRFSGSPNAQPGAVPKRGADSAAILREAGFAEDEIAALAAKE

Sequences:

>Translated_377_residues
MGPLHGIRIVEIAGIGPAPFCGMLLADMGADVILVERTAGRDGDPLDLGRRAIFNRGKRSLALDLKQPEAVGAVLRLVEH
ADALIEGMRPGVMERLGLGPDTCFARNPKLVYGRMTGWGQDGPLAHAAGHDINYIGLSGALWYAGQPGDAPFAPPTLVGD
LGGGALYLAMGVLAGIVDARLRGKGQIVDAAIVDGSANLMNLLLSIHAAGFMPMARGQGLLDGPHWYGSYRCACGGYVSV
GALEPQFYALLVDKLGLADDDDFRNPYDASRWPRLRERLAEIFASRPRAHWVELMEGTDACFAPVLSPAEAQSHPHLAAR
GVYAQRDGILQAAPAPRFSGSPNAQPGAVPKRGADSAAILREAGFAEDEIAALAAKE
>Mature_376_residues
GPLHGIRIVEIAGIGPAPFCGMLLADMGADVILVERTAGRDGDPLDLGRRAIFNRGKRSLALDLKQPEAVGAVLRLVEHA
DALIEGMRPGVMERLGLGPDTCFARNPKLVYGRMTGWGQDGPLAHAAGHDINYIGLSGALWYAGQPGDAPFAPPTLVGDL
GGGALYLAMGVLAGIVDARLRGKGQIVDAAIVDGSANLMNLLLSIHAAGFMPMARGQGLLDGPHWYGSYRCACGGYVSVG
ALEPQFYALLVDKLGLADDDDFRNPYDASRWPRLRERLAEIFASRPRAHWVELMEGTDACFAPVLSPAEAQSHPHLAARG
VYAQRDGILQAAPAPRFSGSPNAQPGAVPKRGADSAAILREAGFAEDEIAALAAKE

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI266456254, Length=376, Percent_Identity=40.9574468085106, Blast_Score=289, Evalue=3e-78,
Organism=Homo sapiens, GI42794625, Length=376, Percent_Identity=40.9574468085106, Blast_Score=289, Evalue=3e-78,
Organism=Homo sapiens, GI266458393, Length=254, Percent_Identity=45.2755905511811, Blast_Score=222, Evalue=4e-58,
Organism=Homo sapiens, GI266458397, Length=251, Percent_Identity=45.0199203187251, Blast_Score=219, Evalue=3e-57,
Organism=Homo sapiens, GI42822893, Length=136, Percent_Identity=49.2647058823529, Blast_Score=133, Evalue=2e-31,
Organism=Homo sapiens, GI266458395, Length=136, Percent_Identity=49.2647058823529, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI300863128, Length=380, Percent_Identity=25.5263157894737, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI300863124, Length=333, Percent_Identity=26.4264264264264, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI300863126, Length=380, Percent_Identity=23.6842105263158, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI13376042, Length=333, Percent_Identity=24.024024024024, Blast_Score=93, Evalue=4e-19,
Organism=Escherichia coli, GI87082093, Length=372, Percent_Identity=27.9569892473118, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1786222, Length=400, Percent_Identity=27.25, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788717, Length=416, Percent_Identity=24.7596153846154, Blast_Score=90, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI115535051, Length=340, Percent_Identity=32.3529411764706, Blast_Score=192, Evalue=3e-49,
Organism=Caenorhabditis elegans, GI32564160, Length=338, Percent_Identity=34.0236686390533, Blast_Score=191, Evalue=4e-49,
Organism=Drosophila melanogaster, GI24585488, Length=348, Percent_Identity=39.9425287356322, Blast_Score=253, Evalue=1e-67,
Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=29.620253164557, Blast_Score=127, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39752; Mature: 39621

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS00387 PPASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPLHGIRIVEIAGIGPAPFCGMLLADMGADVILVERTAGRDGDPLDLGRRAIFNRGKRS
CCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCE
LALDLKQPEAVGAVLRLVEHADALIEGMRPGVMERLGLGPDTCFARNPKLVYGRMTGWGQ
EEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHCCCCCEEEEECCCCCC
DGPLAHAAGHDINYIGLSGALWYAGQPGDAPFAPPTLVGDLGGGALYLAMGVLAGIVDAR
CCCCCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHH
LRGKGQIVDAAIVDGSANLMNLLLSIHAAGFMPMARGQGLLDGPHWYGSYRCACGGYVSV
HCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCEEECCCCEEEE
GALEPQFYALLVDKLGLADDDDFRNPYDASRWPRLRERLAEIFASRPRAHWVELMEGTDA
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCH
CFAPVLSPAEAQSHPHLAARGVYAQRDGILQAAPAPRFSGSPNAQPGAVPKRGADSAAIL
HHHHHCCCHHHCCCCCHHHCCCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH
REAGFAEDEIAALAAKE
HHCCCCHHHHHHHHCCC
>Mature Secondary Structure 
GPLHGIRIVEIAGIGPAPFCGMLLADMGADVILVERTAGRDGDPLDLGRRAIFNRGKRS
CCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCE
LALDLKQPEAVGAVLRLVEHADALIEGMRPGVMERLGLGPDTCFARNPKLVYGRMTGWGQ
EEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHCCCCCEEEEECCCCCC
DGPLAHAAGHDINYIGLSGALWYAGQPGDAPFAPPTLVGDLGGGALYLAMGVLAGIVDAR
CCCCCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHH
LRGKGQIVDAAIVDGSANLMNLLLSIHAAGFMPMARGQGLLDGPHWYGSYRCACGGYVSV
HCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCEEECCCCEEEE
GALEPQFYALLVDKLGLADDDDFRNPYDASRWPRLRERLAEIFASRPRAHWVELMEGTDA
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCH
CFAPVLSPAEAQSHPHLAARGVYAQRDGILQAAPAPRFSGSPNAQPGAVPKRGADSAAIL
HHHHHCCCHHHCCCCCHHHCCCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH
REAGFAEDEIAALAAKE
HHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]