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The map label for this gene is ytfH [H]

Identifier: 126451464

GI number: 126451464

Start: 3087644

End: 3088168

Strand: Reverse

Name: ytfH [H]

Synonym: BURPS1106A_3172

Alternate gene names: 126451464

Gene position: 3088168-3087644 (Counterclockwise)

Preceding gene: 126452334

Following gene: 126454579

Centisome position: 77.43

GC content: 63.81

Gene sequence:

>525_bases
ATGACGACGATGCGAAAGAACGCACCCGAGGGTGAGCAGATTACCGACAGGAAACCTTCATTGCTCGATGCGCCGCGCAA
GGGCAACGTGTACGCGTCGGAATGCCCGACGCGGCTCGTGCTCGACCGCATCGCGGACAAATGGACTGTCCTGATTCTCG
CGCTGCTGTCGCACGAGCCGCTGCGCTTCAACACGCTGCTGCGGCATATCGAGGGCCTGTCGCAGAAGGTGCTGTCGCAA
ACGCTCAAGCGGCTCGAGCGCGACGGGCTCGTCGCGCGCACCGTCTACGCGACGGTGCCGGTATCCGTCGAATATGCGTT
GACGCCGCTCGGCCACACGCTCGCGCACTCGATCACGCCGATCATCGTGTGGTCGGAGACGCACATCGACGCCGTGCTCG
ATGCGCGCACGGCCTATGACGCTCGGCAGGGGGGGGGCGGGCGCCTGAGTGATCGCACGCGTGCGGCGCGTCAGCGATCG
GCATTGAGAAAAAAAGCGAGAAGAATAAATGCCGCGGCAATATGA

Upstream 100 bases:

>100_bases
CGGCGGGCGCCGATCGGCGCCGCGGCGCGGAAACGGACCGTCGTGCAAACGGTGCTAGTATCTACGCCACAGGTAGTTAC
CGGAAGAAACTATAGACGGG

Downstream 100 bases:

>100_bases
TTTTTATTCTCGCCGGACGTTTTTCCTGGCGAATCGAATCGCCGTCATTGTTTCCTGGGTTGTGCGAAACGGGAGAAAAG
TACGAAAAGGGTTGCCTTGG

Product: PadR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MTTMRKNAPEGEQITDRKPSLLDAPRKGNVYASECPTRLVLDRIADKWTVLILALLSHEPLRFNTLLRHIEGLSQKVLSQ
TLKRLERDGLVARTVYATVPVSVEYALTPLGHTLAHSITPIIVWSETHIDAVLDARTAYDARQGGGGRLSDRTRAARQRS
ALRKKARRINAAAI

Sequences:

>Translated_174_residues
MTTMRKNAPEGEQITDRKPSLLDAPRKGNVYASECPTRLVLDRIADKWTVLILALLSHEPLRFNTLLRHIEGLSQKVLSQ
TLKRLERDGLVARTVYATVPVSVEYALTPLGHTLAHSITPIIVWSETHIDAVLDARTAYDARQGGGGRLSDRTRAARQRS
ALRKKARRINAAAI
>Mature_173_residues
TTMRKNAPEGEQITDRKPSLLDAPRKGNVYASECPTRLVLDRIADKWTVLILALLSHEPLRFNTLLRHIEGLSQKVLSQT
LKRLERDGLVARTVYATVPVSVEYALTPLGHTLAHSITPIIVWSETHIDAVLDARTAYDARQGGGGRLSDRTRAARQRSA
LRKKARRINAAAI

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=117, Percent_Identity=41.025641025641, Blast_Score=99, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 19368; Mature: 19236

Theoretical pI: Translated: 10.99; Mature: 10.99

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTMRKNAPEGEQITDRKPSLLDAPRKGNVYASECPTRLVLDRIADKWTVLILALLSHEP
CCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
LRFNTLLRHIEGLSQKVLSQTLKRLERDGLVARTVYATVPVSVEYALTPLGHTLAHSITP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCHHHHHHHHCCCE
IIVWSETHIDAVLDARTAYDARQGGGGRLSDRTRAARQRSALRKKARRINAAAI
EEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTMRKNAPEGEQITDRKPSLLDAPRKGNVYASECPTRLVLDRIADKWTVLILALLSHEP
CCCCCCCCCCCCCCCCCCCHHCCCCCCCEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
LRFNTLLRHIEGLSQKVLSQTLKRLERDGLVARTVYATVPVSVEYALTPLGHTLAHSITP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCHHHHHHHHCCCE
IIVWSETHIDAVLDARTAYDARQGGGGRLSDRTRAARQRSALRKKARRINAAAI
EEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]