Click here to switch to the map view.

The map label for this gene is ydbB [H]

Identifier: 126445502

GI number: 126445502

Start: 2353909

End: 2354289

Strand: Reverse

Name: ydbB [H]

Synonym: BURPS668_A2435

Alternate gene names: 126445502

Gene position: 2354289-2353909 (Counterclockwise)

Preceding gene: 126444271

Following gene: 126443037

Centisome position: 75.28

GC content: 63.25

Gene sequence:

>381_bases
ATGTTTCAGGCAGGCATCGGCGTCAATTTCGAGGCAGCGTTGCGCGACGTGAGCGAGTATTGGTCGCCGCGCGTCGTCGG
GCGCGTGAACGACCAGTACGTGAAGGTCGCGAAGCTCAAGGGCGAATTCACGTGGCACAAGCACGCCGACGAGGACGAGA
TGTTCTACGTCGTCTACGGCCGCTTGCGCATTCAATTCGAAGGGCGCGACGACGTCGTGCTGAACCCGGGCGATTTCTGC
ATCGTGCCGAAGAACACGATGCACAACCCCGTTGCCGAAGCGGAGTGCGGGATCGCGCTGATCGAGACCGTCACGACGCT
GCACACGGGCGACACGCCGTCGCCGCTCGCGAAGAGCATCGACGCTCAGCTCGCCGGCTGA

Upstream 100 bases:

>100_bases
CCGCTTCGCACCGCGTCGGCCACGACGCATGCGTGTTCGGCGCGTTCGCGCGCTTGCTGCTAAGCTGCCGGCTCGAATAT
AGCGAACCAGGAGCGTCCCC

Downstream 100 bases:

>100_bases
TCCTCGCGCGCGCCGAGCGCCGCGCGCATGTCGCCGTACATCCAGCGCAGCGTTTCGTCGAGCGGCGTGCGGCGTGCGTC
GCCGATCGCCGCGCGCAGCT

Product: cupin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MFQAGIGVNFEAALRDVSEYWSPRVVGRVNDQYVKVAKLKGEFTWHKHADEDEMFYVVYGRLRIQFEGRDDVVLNPGDFC
IVPKNTMHNPVAEAECGIALIETVTTLHTGDTPSPLAKSIDAQLAG

Sequences:

>Translated_126_residues
MFQAGIGVNFEAALRDVSEYWSPRVVGRVNDQYVKVAKLKGEFTWHKHADEDEMFYVVYGRLRIQFEGRDDVVLNPGDFC
IVPKNTMHNPVAEAECGIALIETVTTLHTGDTPSPLAKSIDAQLAG
>Mature_126_residues
MFQAGIGVNFEAALRDVSEYWSPRVVGRVNDQYVKVAKLKGEFTWHKHADEDEMFYVVYGRLRIQFEGRDDVVLNPGDFC
IVPKNTMHNPVAEAECGIALIETVTTLHTGDTPSPLAKSIDAQLAG

Specific function: Unknown

COG id: COG0662

COG function: function code G; Mannose-6-phosphate isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SchB/CurC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR019780
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2 [H]

EC number: NA

Molecular weight: Translated: 14025; Mature: 14025

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQAGIGVNFEAALRDVSEYWSPRVVGRVNDQYVKVAKLKGEFTWHKHADEDEMFYVVYG
CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCEEECCCCCCCCEEEEEEE
RLRIQFEGRDDVVLNPGDFCIVPKNTMHNPVAEAECGIALIETVTTLHTGDTPSPLAKSI
EEEEEECCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCEEHHHHHEECCCCCCHHHHHC
DAQLAG
CCCCCC
>Mature Secondary Structure
MFQAGIGVNFEAALRDVSEYWSPRVVGRVNDQYVKVAKLKGEFTWHKHADEDEMFYVVYG
CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCEEECCCCCCCCEEEEEEE
RLRIQFEGRDDVVLNPGDFCIVPKNTMHNPVAEAECGIALIETVTTLHTGDTPSPLAKSI
EEEEEECCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCEEHHHHHEECCCCCCHHHHHC
DAQLAG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]