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The map label for this gene is syrM1 [H]

Identifier: 126444712

GI number: 126444712

Start: 320339

End: 321232

Strand: Reverse

Name: syrM1 [H]

Synonym: BURPS668_A0352

Alternate gene names: 126444712

Gene position: 321232-320339 (Counterclockwise)

Preceding gene: 126445086

Following gene: 126444607

Centisome position: 10.27

GC content: 70.58

Gene sequence:

>894_bases
ATGGACAATCTCAGGCGGCTGGATCTGAACCTGCTGATCACGCTCGACGCGCTGCTGTCGGAGCACAACGTGACGCGCGC
GGCCGCACGGCTGAACCTGTCGCAACCGTCGGTCAGCATTCATCTCGCGAAGCTGAGGGACATCTTCGGCGATCCGCTGC
TGCTGCCGGGGCCGCGCGGCATGCGGCCCACCGCGCGCGCCGACGAATTGCGCGAGCCGCTGCGCCGCGCGCTCGAAACG
CTCGGGCGCGCGGTATCGCCGGGCGCGCCGTTCGATCCGGCCGCCTCCGCTCACACGTGGCGCGTCGCCGCGTCCGACTA
CAGCGAATCGACGGTCGTGCTGCCCGCGCTGAACGGCCTGCGCGCGGCCGCGCCCGGCACGCGCCTGGCCGTCGTCGAAA
CCGTGCCGTCGCGCATCGCGAAGCAGGCCGAGCAAGGCGACATCGATCTCGCGTTCCACATCACCGAATGCGCGCCGGGC
AACCTGCGCCACCGCGCGCTCTTCACCGAGCGTTACGTGCTCGTCGGACGCGCCGGCCACCCCCGGCTGAAGCGGCGGCC
CACGCTCGCGCAGTTCTGCAAGCTCGACCACGTCATCGTCTCGCCGGACGGCGGCGGCTTTCAGGGCGGCACCGATCACG
CGCTCGCGAAGCTCGGCTTCGCGCGGCGCGTCGTGCTGTCCGTGCCGCACTTTCTGTTCATGATGTCGGCTGTCGCGAAC
AGCGATCTCGTTGCGATGATGCCGTCGCGGCTCGTGCGCGACAGCCGCGCGCTGCAAGTGGTCGAGCCGCCCGTCGACGT
GCCCGGCTTCCGGATGGCGATGCTCTGGCACGAGCGCTCGCATCGCGATCCCGCGCATCAGTGGCTGCGCGAGCATATCG
CGGCCTTGGTGTGA

Upstream 100 bases:

>100_bases
TTCATATCGGGAGAATCGATGGATTGACTGGAGAGGTGAACGCAGGTTATCGGCTGCTCGGGTATATTGGAAATTGATTT
CCAATATTCCAGGTATTGCA

Downstream 100 bases:

>100_bases
CGCGTTCGGTTCGGCATCGAACGCGCTTCGCCGCGCATGCGGGCCCATGCGTTCGCGCGACGCTCGAAGCGCCCGGACCG
TTCGGAAACCTATTTTTCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Symbiotic regulator homolog 1 [H]

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MDNLRRLDLNLLITLDALLSEHNVTRAAARLNLSQPSVSIHLAKLRDIFGDPLLLPGPRGMRPTARADELREPLRRALET
LGRAVSPGAPFDPAASAHTWRVAASDYSESTVVLPALNGLRAAAPGTRLAVVETVPSRIAKQAEQGDIDLAFHITECAPG
NLRHRALFTERYVLVGRAGHPRLKRRPTLAQFCKLDHVIVSPDGGGFQGGTDHALAKLGFARRVVLSVPHFLFMMSAVAN
SDLVAMMPSRLVRDSRALQVVEPPVDVPGFRMAMLWHERSHRDPAHQWLREHIAALV

Sequences:

>Translated_297_residues
MDNLRRLDLNLLITLDALLSEHNVTRAAARLNLSQPSVSIHLAKLRDIFGDPLLLPGPRGMRPTARADELREPLRRALET
LGRAVSPGAPFDPAASAHTWRVAASDYSESTVVLPALNGLRAAAPGTRLAVVETVPSRIAKQAEQGDIDLAFHITECAPG
NLRHRALFTERYVLVGRAGHPRLKRRPTLAQFCKLDHVIVSPDGGGFQGGTDHALAKLGFARRVVLSVPHFLFMMSAVAN
SDLVAMMPSRLVRDSRALQVVEPPVDVPGFRMAMLWHERSHRDPAHQWLREHIAALV
>Mature_297_residues
MDNLRRLDLNLLITLDALLSEHNVTRAAARLNLSQPSVSIHLAKLRDIFGDPLLLPGPRGMRPTARADELREPLRRALET
LGRAVSPGAPFDPAASAHTWRVAASDYSESTVVLPALNGLRAAAPGTRLAVVETVPSRIAKQAEQGDIDLAFHITECAPG
NLRHRALFTERYVLVGRAGHPRLKRRPTLAQFCKLDHVIVSPDGGGFQGGTDHALAKLGFARRVVLSVPHFLFMMSAVAN
SDLVAMMPSRLVRDSRALQVVEPPVDVPGFRMAMLWHERSHRDPAHQWLREHIAALV

Specific function: Transcriptional activator that regulates the expression of genes involved in symbiosis. Among other targets it acts on the nolWBTUV operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=302, Percent_Identity=28.476821192053, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87081766, Length=286, Percent_Identity=27.6223776223776, Blast_Score=95, Evalue=4e-21,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32623; Mature: 32623

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLRRLDLNLLITLDALLSEHNVTRAAARLNLSQPSVSIHLAKLRDIFGDPLLLPGPRG
CCCCCEECHHHEEEHHHHHHHCCHHHHHHHCCCCCCCCEEHHHHHHHHHCCCEECCCCCC
MRPTARADELREPLRRALETLGRAVSPGAPFDPAASAHTWRVAASDYSESTVVLPALNGL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCC
RAAAPGTRLAVVETVPSRIAKQAEQGDIDLAFHITECAPGNLRHRALFTERYVLVGRAGH
CCCCCCCEEEEHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHCEEEEECCCC
PRLKRRPTLAQFCKLDHVIVSPDGGGFQGGTDHALAKLGFARRVVLSVPHFLFMMSAVAN
CCCCCCCCHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SDLVAMMPSRLVRDSRALQVVEPPVDVPGFRMAMLWHERSHRDPAHQWLREHIAALV
CCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MDNLRRLDLNLLITLDALLSEHNVTRAAARLNLSQPSVSIHLAKLRDIFGDPLLLPGPRG
CCCCCEECHHHEEEHHHHHHHCCHHHHHHHCCCCCCCCEEHHHHHHHHHCCCEECCCCCC
MRPTARADELREPLRRALETLGRAVSPGAPFDPAASAHTWRVAASDYSESTVVLPALNGL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCC
RAAAPGTRLAVVETVPSRIAKQAEQGDIDLAFHITECAPGNLRHRALFTERYVLVGRAGH
CCCCCCCEEEEHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHCEEEEECCCC
PRLKRRPTLAQFCKLDHVIVSPDGGGFQGGTDHALAKLGFARRVVLSVPHFLFMMSAVAN
CCCCCCCCHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SDLVAMMPSRLVRDSRALQVVEPPVDVPGFRMAMLWHERSHRDPAHQWLREHIAALV
CCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]