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The map label for this gene is hrpA [H]

Identifier: 126444612

GI number: 126444612

Start: 2192626

End: 2194422

Strand: Reverse

Name: hrpA [H]

Synonym: BURPS668_A2260

Alternate gene names: 126444612

Gene position: 2194422-2192626 (Counterclockwise)

Preceding gene: 126443863

Following gene: 126443086

Centisome position: 70.17

GC content: 79.08

Gene sequence:

>1797_bases
GTGACGCGGCGCGCGGCCGCATCGGCTGCCGCCGTCGCGCTCGCGCTCGCGAGCCATGCGGCGGCGCTGCGGGCGGTGCC
GCTCGCGTGGCCGCTCGCGCGTTTCGACTATTGCGTCGGCCCGGTGAACGCCGCCGATGCATTGGGCGAGCTGAGCCGCC
GCTCGGGCATCGCCATCGACGTCGACGCGCGCGCGCCGTGCCGGCTCGACGTGCGCGAGGCGCTGCCGCCGCGGCGCTTC
GTCGAGCGGCTCGCGCGCACCTGCGGGCTCGTGTCGTACTACGACGGCGCGGTGTTGCAGCTCGTCGCGCCCGACGCGTT
CGAGCACGCGGCGGTGCGGCTCAATTACGCGACGCTCGCCGAGCTGCGCGCGGCGCTCGCGCGGCAGCGGATCGTCGACG
CGCGCTGGCGGCCCGGCTATGACGACGCGGCGCGGATCGCGCGCGTCGCCGGCCCGCCGCGCTATGTCGCGCTCGTGCTT
GCCGCCGCGCGCGCGCTCGACGAGGCCGCGCAGACGCGCGTGCGCACCGAGACGCGCGCGTTCCGGCTGCGCGCGCGCGC
GGCGGCCGATCGCGTCGTGCGCGGCGATGGCGACGGCGACGATGCGGTGCTGCCCGGGCTCGCGACGCGACTGCGCCGCC
GGCTCGAGCAGGACGGCGCCGCGCCGCGCGCGGTGCCGGGCGTGCGCGAATTCACCGCATCGTTGCCGATCGTCGACGCG
GACGCACGCTCGAACACCGTGCTGATCCGCGACGTGCCCGCACGGCTCGCGCGCGACGCGCGGCTCGTCGCGCAGCTCGA
TACGCGGCCCGCGTCGATCCGGATCGACGCGTTCGGCGCAACGCTCGCGCCCGCGCAGCTCGACGCGCTCCGGCTGCGAT
GGCGCGACGGCGCGCCGGCTTCGGGCGCGTCGCGCGATGCGGGCGACGCGCGCGACGTTTCGCGTGCGTCGGCGGGCGGC
CGGCCCGTGGGCGCGTCCCGCCTGTCCGGCGCGCGGAACGAGGCGGCCGCGGCGGAGGCGCGGCGTGCGCCCGCGGTGTC
CGCCGCACCCGACGCGTCGGGCGCATCCGCCGCATCCGGCCCATCCGCCGCCTCAGGCGCTCCCGACGCCGTCGACGCGT
CCGCCGGCTCGGCCGACTCCCCCCGCGCATCCGCGGTGCGCATCGCGATCGTGTCCACGCCTGCCGGCTGCGCGCCGGTG
CGCGCGCGCATCGCCGAGCTTGCCGCGCACGGCGACGCGTCGATCGACGCCGACGACTCGACGCTGGCGCTTCCCGATAG
CCGCGCGGATTTCGGCCGGCTGCGGCTGTCGTTCGTCGCGTCGGGCGATGGCGACGCGCGCGCGCTCGATGCGCGGCGCA
ACGGTTTCGCGATGCGGGTCACGCCGCACGAGACCGCGCAGCCGGCGCGCTACGCGCTCGACATGCGGATCGTCGAGCGT
CGGGCCGACGGCGACGCGGCCGGCGCGTCGTCGCGCGAAACCGTGGCCGGCGTGACGCTCGCGGCGGGCGAGTGCGCGGC
GCTCGCGCTGCCGTCGGCCGCGCGCGGCGAGCAACGGCTCGTGCTGGTGACGCCGCGAACGGTGCCGGCCGATCCGGCGC
GCTTGCCGCCGCAGGCCTCGCCGAACGCGCCGGCGGCCGCGGCCGCGGCCGTCGCCGCCAACGCGCGGGGGCCCGACACC
GCCGAGCCCGCGGCGCGCGCGCATGCGGCCGCGCGCGCGCATCCGCCGGCGGCGCCGCTGCCTTCGCCGTCCGCCGGCCT
CGGCTTGCGGGCGCAGACCCGCCTGCTCGGCAATTGA

Upstream 100 bases:

>100_bases
GGCTGAAGGCGGCGGGCATCGGCTGGACCGTGCATGCGGCGTACGCGACCGGCTACCGCCTGAACCTCGGCGCGGACGCG
GAAACGGCGGACCGCGCGTC

Downstream 100 bases:

>100_bases
TGCGAATCCCGCCGTGATTAAACGGCGCTCAATCAACGGTCATCAAACGTCGATCAAACGTCGATCGCGCACGATTTAGG
CGCACGATGGCAATCGCCTT

Product: type II/III secretion system family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 598; Mature: 597

Protein sequence:

>598_residues
MTRRAAASAAAVALALASHAAALRAVPLAWPLARFDYCVGPVNAADALGELSRRSGIAIDVDARAPCRLDVREALPPRRF
VERLARTCGLVSYYDGAVLQLVAPDAFEHAAVRLNYATLAELRAALARQRIVDARWRPGYDDAARIARVAGPPRYVALVL
AAARALDEAAQTRVRTETRAFRLRARAAADRVVRGDGDGDDAVLPGLATRLRRRLEQDGAAPRAVPGVREFTASLPIVDA
DARSNTVLIRDVPARLARDARLVAQLDTRPASIRIDAFGATLAPAQLDALRLRWRDGAPASGASRDAGDARDVSRASAGG
RPVGASRLSGARNEAAAAEARRAPAVSAAPDASGASAASGPSAASGAPDAVDASAGSADSPRASAVRIAIVSTPAGCAPV
RARIAELAAHGDASIDADDSTLALPDSRADFGRLRLSFVASGDGDARALDARRNGFAMRVTPHETAQPARYALDMRIVER
RADGDAAGASSRETVAGVTLAAGECAALALPSAARGEQRLVLVTPRTVPADPARLPPQASPNAPAAAAAAVAANARGPDT
AEPAARAHAAARAHPPAAPLPSPSAGLGLRAQTRLLGN

Sequences:

>Translated_598_residues
MTRRAAASAAAVALALASHAAALRAVPLAWPLARFDYCVGPVNAADALGELSRRSGIAIDVDARAPCRLDVREALPPRRF
VERLARTCGLVSYYDGAVLQLVAPDAFEHAAVRLNYATLAELRAALARQRIVDARWRPGYDDAARIARVAGPPRYVALVL
AAARALDEAAQTRVRTETRAFRLRARAAADRVVRGDGDGDDAVLPGLATRLRRRLEQDGAAPRAVPGVREFTASLPIVDA
DARSNTVLIRDVPARLARDARLVAQLDTRPASIRIDAFGATLAPAQLDALRLRWRDGAPASGASRDAGDARDVSRASAGG
RPVGASRLSGARNEAAAAEARRAPAVSAAPDASGASAASGPSAASGAPDAVDASAGSADSPRASAVRIAIVSTPAGCAPV
RARIAELAAHGDASIDADDSTLALPDSRADFGRLRLSFVASGDGDARALDARRNGFAMRVTPHETAQPARYALDMRIVER
RADGDAAGASSRETVAGVTLAAGECAALALPSAARGEQRLVLVTPRTVPADPARLPPQASPNAPAAAAAAVAANARGPDT
AEPAARAHAAARAHPPAAPLPSPSAGLGLRAQTRLLGN
>Mature_597_residues
TRRAAASAAAVALALASHAAALRAVPLAWPLARFDYCVGPVNAADALGELSRRSGIAIDVDARAPCRLDVREALPPRRFV
ERLARTCGLVSYYDGAVLQLVAPDAFEHAAVRLNYATLAELRAALARQRIVDARWRPGYDDAARIARVAGPPRYVALVLA
AARALDEAAQTRVRTETRAFRLRARAAADRVVRGDGDGDDAVLPGLATRLRRRLEQDGAAPRAVPGVREFTASLPIVDAD
ARSNTVLIRDVPARLARDARLVAQLDTRPASIRIDAFGATLAPAQLDALRLRWRDGAPASGASRDAGDARDVSRASAGGR
PVGASRLSGARNEAAAAEARRAPAVSAAPDASGASAASGPSAASGAPDAVDASAGSADSPRASAVRIAIVSTPAGCAPVR
ARIAELAAHGDASIDADDSTLALPDSRADFGRLRLSFVASGDGDARALDARRNGFAMRVTPHETAQPARYALDMRIVERR
ADGDAAGASSRETVAGVTLAAGECAALALPSAARGEQRLVLVTPRTVPADPARLPPQASPNAPAAAAAAVAANARGPDTA
EPAARAHAAARAHPPAAPLPSPSAGLGLRAQTRLLGN

Specific function: Involved in the secretion of a proteinaceous elicitor of the hypersensitivity response in plants [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR004845
- InterPro:   IPR003522 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 61447; Mature: 61315

Theoretical pI: Translated: 11.17; Mature: 11.17

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRRAAASAAAVALALASHAAALRAVPLAWPLARFDYCVGPVNAADALGELSRRSGIAID
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
VDARAPCRLDVREALPPRRFVERLARTCGLVSYYDGAVLQLVAPDAFEHAAVRLNYATLA
ECCCCCCCCCHHHCCCHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCCEEEECHHHHH
ELRAALARQRIVDARWRPGYDDAARIARVAGPPRYVALVLAAARALDEAAQTRVRTETRA
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRLRARAAADRVVRGDGDGDDAVLPGLATRLRRRLEQDGAAPRAVPGVREFTASLPIVDA
HHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEC
DARSNTVLIRDVPARLARDARLVAQLDTRPASIRIDAFGATLAPAQLDALRLRWRDGAPA
CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHEEECCCCCC
SGASRDAGDARDVSRASAGGRPVGASRLSGARNEAAAAEARRAPAVSAAPDASGASAASG
CCCCCCCCCHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PSAASGAPDAVDASAGSADSPRASAVRIAIVSTPAGCAPVRARIAELAAHGDASIDADDS
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCC
TLALPDSRADFGRLRLSFVASGDGDARALDARRNGFAMRVTPHETAQPARYALDMRIVER
EEECCCCCCCCCEEEEEEEECCCCCCEEEHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH
RADGDAAGASSRETVAGVTLAAGECAALALPSAARGEQRLVLVTPRTVPADPARLPPQAS
CCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
PNAPAAAAAAVAANARGPDTAEPAARAHAAARAHPPAAPLPSPSAGLGLRAQTRLLGN
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
TRRAAASAAAVALALASHAAALRAVPLAWPLARFDYCVGPVNAADALGELSRRSGIAID
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
VDARAPCRLDVREALPPRRFVERLARTCGLVSYYDGAVLQLVAPDAFEHAAVRLNYATLA
ECCCCCCCCCHHHCCCHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCCEEEECHHHHH
ELRAALARQRIVDARWRPGYDDAARIARVAGPPRYVALVLAAARALDEAAQTRVRTETRA
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRLRARAAADRVVRGDGDGDDAVLPGLATRLRRRLEQDGAAPRAVPGVREFTASLPIVDA
HHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEC
DARSNTVLIRDVPARLARDARLVAQLDTRPASIRIDAFGATLAPAQLDALRLRWRDGAPA
CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHEEECCCCCC
SGASRDAGDARDVSRASAGGRPVGASRLSGARNEAAAAEARRAPAVSAAPDASGASAASG
CCCCCCCCCHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PSAASGAPDAVDASAGSADSPRASAVRIAIVSTPAGCAPVRARIAELAAHGDASIDADDS
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCC
TLALPDSRADFGRLRLSFVASGDGDARALDARRNGFAMRVTPHETAQPARYALDMRIVER
EEECCCCCCCCCEEEEEEEECCCCCCEEEHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH
RADGDAAGASSRETVAGVTLAAGECAALALPSAARGEQRLVLVTPRTVPADPARLPPQAS
CCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
PNAPAAAAAAVAANARGPDTAEPAARAHAAARAHPPAAPLPSPSAGLGLRAQTRLLGN
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1472716; 7623665; 11823852 [H]