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The map label for this gene is yjiR [C]

Identifier: 126444418

GI number: 126444418

Start: 669329

End: 670765

Strand: Reverse

Name: yjiR [C]

Synonym: BURPS668_A0701

Alternate gene names: 126444418

Gene position: 670765-669329 (Counterclockwise)

Preceding gene: 126445342

Following gene: 126445309

Centisome position: 21.45

GC content: 72.65

Gene sequence:

>1437_bases
ATGGCGATATGCATGATGTCGTCTGCGTCGTGGATCGATTGCGATGCCGCATCGTATGACCGAGAATCAATACAATCAAA
TAATTGTCATGGATACATCGGCATGGCTCACGCCCGCTACAAGCGCCTCGTCGACACGCTCGCCGCCGATATCCGCTCGG
GCCGCCTGCCGCCCGGCGCGCGCCTGCCGACGCATCGCAAGCTCGCGGCGGCCGAGGGCCTCGCGCTCGTCACGGCGACG
CGCGTCTACGCGGAGCTCGAGGCAATGGGGCTCGTGAGCGGCGAGACCGGCCGCGGCACGTTCGTGCGGGAAACCGCGCT
GCCGCGCGGGCTCGGCGTCGACCAGCACGCGAGCGCCGCCGGCGTCGTCGATCTCGCGTTCAACTATCCGTCGCTGCCCG
AGCAGGCCGAGCTGCTGCGCGGCGCGCTGCGCCAGCTTGCGTCGTCGGGCGATCTCGACGCGCTGCTGCGCTACCAGCCG
CACGGCGGGCGGTGGCACGAGCGCGCGTCGGTCGCCCGCCATCTCGCGCGCCGCGGGCTGTCGGTCGACGCGCAACGCGT
CGCGATCGTCAACGGCACGCAGCACGGGCTCGCGGTGACCGCGATGGCGCTGCTGCGGCCGGGCGACGTCGTCGCCGTCG
ACGCGCTCACCTACCCCGGCTTCAAGGTCGTCGCCGATGCGCAGCACCTCGAGCTCGCGCCGCTTCCGGCATCCGGCCAG
GGCCCCGACCCCGACGCGCTCGAGCGCCTTTGCAGGACGCGGCGCGTGCGTGCGGTGTACACGATGCCGACGCTGCACAA
TCCGCTCGGCTGGGTGACGAGCGCGCACCGCCGGCGCCGGCTCGTCGCGATCGCGCGCCGCCACGGGCTGCTGATCATCG
AGGACGGCGCGTATGCGTTCCTCGCCGACGATCCGCCCGCGCCGATCGCCGCGCTCGCGCCGGAGGCTACCGTCTACGTG
TCCGGGCTGTCGAAGAACGTCGCGACCGGGCTGCGCGTCGGCTTCGTCGCGGCGCCCGAGCCGTGGGCGCCGGCGATCGA
GCGCGCGATTCGGGGCACGACGTGGAACACGCCCGGCGTGATGACGGCGATCGCCTGCGGCTGGCTCGACGACGGAACGG
TCGAGCGGCTCGAGGCGGACAAGCGCCGCGACGCCGCGGCGCGGCAGGCGATCGCGAGCGAAGCGTTCGCGGGGCTGCGC
TGCATCCGCCATCCGGCGTCATATTTCGTGTGGCTGCCGCTTGCCGATGACGCGCGCGCCGACCGGGTCGCGATGACGCT
GATGCGCGAGCGGGTGGCGGTGTCGACCGCCGAGCCGTTCGCGACGTCCGCGCACGCGCCGCACGCGATCCGCGTCGCGC
TCGGGTCCGTCGATCCGCCGACGCTGCGCGACGCGCTCGGCAAGGTGCGACGGGCGATCGACGCGCATTCGTATTAG

Upstream 100 bases:

>100_bases
CGGGCTCGCGATCGACACGCGCCAGCCGGGCTTCTTCACGCAGTTGAGCACGCCGAGCGCGATCAGCGAGTCGAGCTCGT
TGAAACCATCGAAAGTCAGA

Downstream 100 bases:

>100_bases
GACGTCCGCCGGCTCGCGCGCGGCCTCCGGCCGGCATCGGGGACGACATCGGGGACGACATCGAACCGTCCGGCCGCCGA
CGGCGCGGCCGATAGCCGAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MAICMMSSASWIDCDAASYDRESIQSNNCHGYIGMAHARYKRLVDTLAADIRSGRLPPGARLPTHRKLAAAEGLALVTAT
RVYAELEAMGLVSGETGRGTFVRETALPRGLGVDQHASAAGVVDLAFNYPSLPEQAELLRGALRQLASSGDLDALLRYQP
HGGRWHERASVARHLARRGLSVDAQRVAIVNGTQHGLAVTAMALLRPGDVVAVDALTYPGFKVVADAQHLELAPLPASGQ
GPDPDALERLCRTRRVRAVYTMPTLHNPLGWVTSAHRRRRLVAIARRHGLLIIEDGAYAFLADDPPAPIAALAPEATVYV
SGLSKNVATGLRVGFVAAPEPWAPAIERAIRGTTWNTPGVMTAIACGWLDDGTVERLEADKRRDAAARQAIASEAFAGLR
CIRHPASYFVWLPLADDARADRVAMTLMRERVAVSTAEPFATSAHAPHAIRVALGSVDPPTLRDALGKVRRAIDAHSY

Sequences:

>Translated_478_residues
MAICMMSSASWIDCDAASYDRESIQSNNCHGYIGMAHARYKRLVDTLAADIRSGRLPPGARLPTHRKLAAAEGLALVTAT
RVYAELEAMGLVSGETGRGTFVRETALPRGLGVDQHASAAGVVDLAFNYPSLPEQAELLRGALRQLASSGDLDALLRYQP
HGGRWHERASVARHLARRGLSVDAQRVAIVNGTQHGLAVTAMALLRPGDVVAVDALTYPGFKVVADAQHLELAPLPASGQ
GPDPDALERLCRTRRVRAVYTMPTLHNPLGWVTSAHRRRRLVAIARRHGLLIIEDGAYAFLADDPPAPIAALAPEATVYV
SGLSKNVATGLRVGFVAAPEPWAPAIERAIRGTTWNTPGVMTAIACGWLDDGTVERLEADKRRDAAARQAIASEAFAGLR
CIRHPASYFVWLPLADDARADRVAMTLMRERVAVSTAEPFATSAHAPHAIRVALGSVDPPTLRDALGKVRRAIDAHSY
>Mature_477_residues
AICMMSSASWIDCDAASYDRESIQSNNCHGYIGMAHARYKRLVDTLAADIRSGRLPPGARLPTHRKLAAAEGLALVTATR
VYAELEAMGLVSGETGRGTFVRETALPRGLGVDQHASAAGVVDLAFNYPSLPEQAELLRGALRQLASSGDLDALLRYQPH
GGRWHERASVARHLARRGLSVDAQRVAIVNGTQHGLAVTAMALLRPGDVVAVDALTYPGFKVVADAQHLELAPLPASGQG
PDPDALERLCRTRRVRAVYTMPTLHNPLGWVTSAHRRRRLVAIARRHGLLIIEDGAYAFLADDPPAPIAALAPEATVYVS
GLSKNVATGLRVGFVAAPEPWAPAIERAIRGTTWNTPGVMTAIACGWLDDGTVERLEADKRRDAAARQAIASEAFAGLRC
IRHPASYFVWLPLADDARADRVAMTLMRERVAVSTAEPFATSAHAPHAIRVALGSVDPPTLRDALGKVRRAIDAHSY

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=217, Percent_Identity=24.4239631336406, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI33469970, Length=217, Percent_Identity=24.4239631336406, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI1790797, Length=466, Percent_Identity=25.3218884120172, Blast_Score=141, Evalue=8e-35,
Organism=Escherichia coli, GI1787710, Length=451, Percent_Identity=24.8337028824834, Blast_Score=115, Evalue=8e-27,
Organism=Drosophila melanogaster, GI21356535, Length=288, Percent_Identity=23.6111111111111, Blast_Score=76, Evalue=5e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51314; Mature: 51183

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAICMMSSASWIDCDAASYDRESIQSNNCHGYIGMAHARYKRLVDTLAADIRSGRLPPGA
CEEEEECCCCCEECCCCCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCC
RLPTHRKLAAAEGLALVTATRVYAELEAMGLVSGETGRGTFVRETALPRGLGVDQHASAA
CCCCCHHHHHHCCCHHHHHHHHHHHHHHHEEECCCCCCCCEEEHHCCCCCCCCCCCCCCC
GVVDLAFNYPSLPEQAELLRGALRQLASSGDLDALLRYQPHGGRWHERASVARHLARRGL
CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC
SVDAQRVAIVNGTQHGLAVTAMALLRPGDVVAVDALTYPGFKVVADAQHLELAPLPASGQ
CCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCEEECCCCCCC
GPDPDALERLCRTRRVRAVYTMPTLHNPLGWVTSAHRRRRLVAIARRHGLLIIEDGAYAF
CCCHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEE
LADDPPAPIAALAPEATVYVSGLSKNVATGLRVGFVAAPEPWAPAIERAIRGTTWNTPGV
EECCCCCCHHHCCCCCEEEEECCCHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCCCCCH
MTAIACGWLDDGTVERLEADKRRDAAARQAIASEAFAGLRCIRHPASYFVWLPLADDARA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCH
DRVAMTLMRERVAVSTAEPFATSAHAPHAIRVALGSVDPPTLRDALGKVRRAIDAHSY
HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AICMMSSASWIDCDAASYDRESIQSNNCHGYIGMAHARYKRLVDTLAADIRSGRLPPGA
EEEEECCCCCEECCCCCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCC
RLPTHRKLAAAEGLALVTATRVYAELEAMGLVSGETGRGTFVRETALPRGLGVDQHASAA
CCCCCHHHHHHCCCHHHHHHHHHHHHHHHEEECCCCCCCCEEEHHCCCCCCCCCCCCCCC
GVVDLAFNYPSLPEQAELLRGALRQLASSGDLDALLRYQPHGGRWHERASVARHLARRGL
CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC
SVDAQRVAIVNGTQHGLAVTAMALLRPGDVVAVDALTYPGFKVVADAQHLELAPLPASGQ
CCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCEEECCCCCCC
GPDPDALERLCRTRRVRAVYTMPTLHNPLGWVTSAHRRRRLVAIARRHGLLIIEDGAYAF
CCCHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEE
LADDPPAPIAALAPEATVYVSGLSKNVATGLRVGFVAAPEPWAPAIERAIRGTTWNTPGV
EECCCCCCHHHCCCCCEEEEECCCHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCCCCCH
MTAIACGWLDDGTVERLEADKRRDAAARQAIASEAFAGLRCIRHPASYFVWLPLADDARA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCH
DRVAMTLMRERVAVSTAEPFATSAHAPHAIRVALGSVDPPTLRDALGKVRRAIDAHSY
HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]