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The map label for this gene is soxC [H]

Identifier: 126444188

GI number: 126444188

Start: 1180609

End: 1181925

Strand: Reverse

Name: soxC [H]

Synonym: BURPS668_A1248

Alternate gene names: 126444188

Gene position: 1181925-1180609 (Counterclockwise)

Preceding gene: 126445111

Following gene: 126443021

Centisome position: 37.79

GC content: 71.15

Gene sequence:

>1317_bases
ATGGCCATTTCCAGCCCCGATTCCACGCTGCGCCGGGCCACCGCGCCCGCCGCCCCGCCACAGGCCGACGCCGACGCCAG
TACCGACGCGCATGACGGCAAGATCGCCGACGCCGCGCTCCTGTTCGACGACGATCCGCTGATCCGCCGTTTCGCGCCGC
TGTTCGAGCGAATCGCACACGGCGCGGCCGCCCGCGACCGGGATCGCGCACTGCCGTACGAACCGGTCGAGTGGCTGCGC
GCCGCGGGCTTCACGAAACTGCGCGTGCCGCGGGCCGCCGGCGGCGCCGGCATCGGCCTCGCGCCATTCTTCGCGCTGAT
CGCGCGGCTCGGCGAAGCCGATCCGAATCTGCCGCAGATCCTGCGTGTGCACGGCGGCTTTATCGAAATGCTGCACGAAA
GCGCCGACGACGCGTTGCGCAGCCGCTGGTTCGCGCGCGTTGCGCAAGGAACGATCGTCGGTGGCGCGACCGCGGAACGG
AGCGCCGTCACGAGCAACACCGTGCGGCTGTCGCGAGAGAACGGCAAGCTGTATCTCGACGGCGAGAAGTACTACACGAC
GGGCACGCTGTACGCGGACTGGATCGACGTGACCGCGAACGACGGCGACACGGACCTGCGCGTGCTGGTGCCGGCCGCCA
CGCCGGGCGTCGAGCGCCTCGACGATTGGGACGGCTTCGGGCAGCGCCTGACGGGCAGCGGCACGACGCGCTTCACGCGC
GTCGAGGTCGAGCCGGGCGACATCTATCGGCGTTTCGATGCGTCCCGCCCGCGCGGCAACAGCCTGCTGACCGCATACTT
CCAGACGCTGCACCTCGCGAATCTCGCGGGCATCGCGCGCGCGGTGCTGCGCGACGCGGTCGCGTTCACGCGCGATCGCA
CGCGCACGTTCGGCGTGCCGGGTGCGTCGAGCCCCCGTCACGACCCGCTCGTGCAGCGCGTGATCGGCCGGCTCGCGAGC
CTCGCGTATTCGACGCAGAGCCTCGTCGCGACAATCGCGCGCACGCTCGACGACGTCTGCGCGGCGCGCGCGGCGGGCCG
CGCGACCGAGGACGCGTACGTGCGCGTCGACATCCAGGCGTTCCAGGCGCAGCAGATCGTGCTCGCGCAGACGCTCGAGG
CCGCGACGCTGCTGTTCGAAGTGGGCGGCGCATCGGCGACGAGCGAGACACGCCGGTTCGATCGCCACTGGCGCAACGCG
CGCGTGCTCGCGTCGCACAATCCGGCGATCGTCCGCGAAGCGGTGATCGGCAATTACTATCTGAACGGCGTCGGGCACAA
CGAGCGCTTCGGCATCGCACGCACGGGCGTGCGCTGA

Upstream 100 bases:

>100_bases
CGTTCGCGCCGCATAAGCATCGCACGATTCGTTCGTTGTCCGGGCAGGCACGCCCCGTTTAACGTGGCTGTTTTCGCGCC
GCTCCCCGCCAGGACCTCCG

Downstream 100 bases:

>100_bases
CGCCGGCAACGCCGCGCGAACGCAGCGTTGCCGGCATGACGTCGAGCTTGCTCGCGCGGGCTTGACGCCCGGCATTTCGA
GCATCGCGCATCGGTGCTTC

Product: Acyl-CoA dehydrogenases

Products: gamma-butyrobetaine; Acceptor; gamma-butyrobetainyl-CoA [C]

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 438; Mature: 437

Protein sequence:

>438_residues
MAISSPDSTLRRATAPAAPPQADADASTDAHDGKIADAALLFDDDPLIRRFAPLFERIAHGAAARDRDRALPYEPVEWLR
AAGFTKLRVPRAAGGAGIGLAPFFALIARLGEADPNLPQILRVHGGFIEMLHESADDALRSRWFARVAQGTIVGGATAER
SAVTSNTVRLSRENGKLYLDGEKYYTTGTLYADWIDVTANDGDTDLRVLVPAATPGVERLDDWDGFGQRLTGSGTTRFTR
VEVEPGDIYRRFDASRPRGNSLLTAYFQTLHLANLAGIARAVLRDAVAFTRDRTRTFGVPGASSPRHDPLVQRVIGRLAS
LAYSTQSLVATIARTLDDVCAARAAGRATEDAYVRVDIQAFQAQQIVLAQTLEAATLLFEVGGASATSETRRFDRHWRNA
RVLASHNPAIVREAVIGNYYLNGVGHNERFGIARTGVR

Sequences:

>Translated_438_residues
MAISSPDSTLRRATAPAAPPQADADASTDAHDGKIADAALLFDDDPLIRRFAPLFERIAHGAAARDRDRALPYEPVEWLR
AAGFTKLRVPRAAGGAGIGLAPFFALIARLGEADPNLPQILRVHGGFIEMLHESADDALRSRWFARVAQGTIVGGATAER
SAVTSNTVRLSRENGKLYLDGEKYYTTGTLYADWIDVTANDGDTDLRVLVPAATPGVERLDDWDGFGQRLTGSGTTRFTR
VEVEPGDIYRRFDASRPRGNSLLTAYFQTLHLANLAGIARAVLRDAVAFTRDRTRTFGVPGASSPRHDPLVQRVIGRLAS
LAYSTQSLVATIARTLDDVCAARAAGRATEDAYVRVDIQAFQAQQIVLAQTLEAATLLFEVGGASATSETRRFDRHWRNA
RVLASHNPAIVREAVIGNYYLNGVGHNERFGIARTGVR
>Mature_437_residues
AISSPDSTLRRATAPAAPPQADADASTDAHDGKIADAALLFDDDPLIRRFAPLFERIAHGAAARDRDRALPYEPVEWLRA
AGFTKLRVPRAAGGAGIGLAPFFALIARLGEADPNLPQILRVHGGFIEMLHESADDALRSRWFARVAQGTIVGGATAERS
AVTSNTVRLSRENGKLYLDGEKYYTTGTLYADWIDVTANDGDTDLRVLVPAATPGVERLDDWDGFGQRLTGSGTTRFTRV
EVEPGDIYRRFDASRPRGNSLLTAYFQTLHLANLAGIARAVLRDAVAFTRDRTRTFGVPGASSPRHDPLVQRVIGRLASL
AYSTQSLVATIARTLDDVCAARAAGRATEDAYVRVDIQAFQAQQIVLAQTLEAATLLFEVGGASATSETRRFDRHWRNAR
VLASHNPAIVREAVIGNYYLNGVGHNERFGIARTGVR

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.- [C]

Molecular weight: Translated: 47503; Mature: 47372

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISSPDSTLRRATAPAAPPQADADASTDAHDGKIADAALLFDDDPLIRRFAPLFERIAH
CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHC
GAAARDRDRALPYEPVEWLRAAGFTKLRVPRAAGGAGIGLAPFFALIARLGEADPNLPQI
CCCCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHH
LRVHGGFIEMLHESADDALRSRWFARVAQGTIVGGATAERSAVTSNTVRLSRENGKLYLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHCCCEEEEEECCCEEEEC
GEKYYTTGTLYADWIDVTANDGDTDLRVLVPAATPGVERLDDWDGFGQRLTGSGTTRFTR
CCEEEEECEEEEEEEEEECCCCCCCEEEEEECCCCCHHHHHCHHCCCCEECCCCCCEEEE
VEVEPGDIYRRFDASRPRGNSLLTAYFQTLHLANLAGIARAVLRDAVAFTRDRTRTFGVP
EEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
GASSPRHDPLVQRVIGRLASLAYSTQSLVATIARTLDDVCAARAAGRATEDAYVRVDIQA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEH
FQAQQIVLAQTLEAATLLFEVGGASATSETRRFDRHWRNARVLASHNPAIVREAVIGNYY
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCE
LNGVGHNERFGIARTGVR
ECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AISSPDSTLRRATAPAAPPQADADASTDAHDGKIADAALLFDDDPLIRRFAPLFERIAH
CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHC
GAAARDRDRALPYEPVEWLRAAGFTKLRVPRAAGGAGIGLAPFFALIARLGEADPNLPQI
CCCCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHH
LRVHGGFIEMLHESADDALRSRWFARVAQGTIVGGATAERSAVTSNTVRLSRENGKLYLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHCCCEEEEEECCCEEEEC
GEKYYTTGTLYADWIDVTANDGDTDLRVLVPAATPGVERLDDWDGFGQRLTGSGTTRFTR
CCEEEEECEEEEEEEEEECCCCCCCEEEEEECCCCCHHHHHCHHCCCCEECCCCCCEEEE
VEVEPGDIYRRFDASRPRGNSLLTAYFQTLHLANLAGIARAVLRDAVAFTRDRTRTFGVP
EEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
GASSPRHDPLVQRVIGRLASLAYSTQSLVATIARTLDDVCAARAAGRATEDAYVRVDIQA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEH
FQAQQIVLAQTLEAATLLFEVGGASATSETRRFDRHWRNARVLASHNPAIVREAVIGNYY
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCE
LNGVGHNERFGIARTGVR
ECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: crotono-betaine; reduced acceptor; crotonobetainyl-CoA [C]

Specific reaction: reduced acceptor + crotono-betaine = Acceptor + gamma-butyrobetaine reduced acceptor + crotonobetainyl-CoA = Acceptor + gamma-butyrobetainyl-CoA [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]