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The map label for this gene is ydhC [H]

Identifier: 126443644

GI number: 126443644

Start: 472209

End: 472868

Strand: Reverse

Name: ydhC [H]

Synonym: BURPS668_A0519

Alternate gene names: 126443644

Gene position: 472868-472209 (Counterclockwise)

Preceding gene: 126444516

Following gene: 126443302

Centisome position: 15.12

GC content: 61.97

Gene sequence:

>660_bases
ATGGAGAAAATCTCGTCCGATACGGGAAGCGCCTATGACGAGATCCGCTCGCGGATCTTCGACGGCCGGTTGTCGCCCGG
GCAGAAAATCTCTCACCGGGGCCTCGCGCACGAACTGGGCGTCGGGCAGATGCCGGTGCGCAGCGCATTGCAACTGCTCG
CCTCGGAGGGGCTCGTCAACATCGTCGACAAGAGCGGCACCTTCGTCAACGAGCCGACGCGCGACGATCTGCGCGAAATC
TACGAGCTGCGGCTCGCGCTCGAAAGCACCGCCGCGTACCTCGCGGCGCGCGGCGGCGTGACGGACGGGCTGTCGCGCTC
GCATGCGCAGATGCGCAGGCTCGTCGACGAGAACATCGCCGACATCATGACCGAGCAGAAAATCGGCTGGGTCTTTCATG
ACGAAATATTCAAGGCGGCGCGCAACGATCGGCTATTTACGACATACAAGCTGTTGCGCGCGCAAACCCATGCGCTGAAC
GAACTGCCGCGAAGCGATTTCGCCACCGTCAGGCGCGGCACGCTCGAACATTTGGAGATTTACGCGGCCATCGACGCGCG
GGACGCGGAAACGGCGCGGCACCGGATGTGGAATCACGTGATCGACGGGACTCCGGACAGAATCCGATTAATTCGAGCTC
AATATGACACTGGCCAATAA

Upstream 100 bases:

>100_bases
CGCGAAAAAATATTTGTTGTTCGCCTCCGCCAATGCGGTTAATCTAAATAAATGCTGTTCGCGTCATTAAATTCAAGCAA
ACAAACTGCGATCACAGATA

Downstream 100 bases:

>100_bases
AAAAATTTCGTTGCCGCTGCAAATGATCCTCGGCCTCGCGCTCGGCGTGGTCTTCGGCCTGCTCGCGCCCGCCGCGAGCC
GCGACCTGGCGTTCATTTCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MEKISSDTGSAYDEIRSRIFDGRLSPGQKISHRGLAHELGVGQMPVRSALQLLASEGLVNIVDKSGTFVNEPTRDDLREI
YELRLALESTAAYLAARGGVTDGLSRSHAQMRRLVDENIADIMTEQKIGWVFHDEIFKAARNDRLFTTYKLLRAQTHALN
ELPRSDFATVRRGTLEHLEIYAAIDARDAETARHRMWNHVIDGTPDRIRLIRAQYDTGQ

Sequences:

>Translated_219_residues
MEKISSDTGSAYDEIRSRIFDGRLSPGQKISHRGLAHELGVGQMPVRSALQLLASEGLVNIVDKSGTFVNEPTRDDLREI
YELRLALESTAAYLAARGGVTDGLSRSHAQMRRLVDENIADIMTEQKIGWVFHDEIFKAARNDRLFTTYKLLRAQTHALN
ELPRSDFATVRRGTLEHLEIYAAIDARDAETARHRMWNHVIDGTPDRIRLIRAQYDTGQ
>Mature_219_residues
MEKISSDTGSAYDEIRSRIFDGRLSPGQKISHRGLAHELGVGQMPVRSALQLLASEGLVNIVDKSGTFVNEPTRDDLREI
YELRLALESTAAYLAARGGVTDGLSRSHAQMRRLVDENIADIMTEQKIGWVFHDEIFKAARNDRLFTTYKLLRAQTHALN
ELPRSDFATVRRGTLEHLEIYAAIDARDAETARHRMWNHVIDGTPDRIRLIRAQYDTGQ

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24757; Mature: 24757

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKISSDTGSAYDEIRSRIFDGRLSPGQKISHRGLAHELGVGQMPVRSALQLLASEGLVN
CCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCHHHCCCCCCCHHHHHHHHHHCCHHE
IVDKSGTFVNEPTRDDLREIYELRLALESTAAYLAARGGVTDGLSRSHAQMRRLVDENIA
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
DIMTEQKIGWVFHDEIFKAARNDRLFTTYKLLRAQTHALNELPRSDFATVRRGTLEHLEI
HHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHH
YAAIDARDAETARHRMWNHVIDGTPDRIRLIRAQYDTGQ
HHHCCCCCHHHHHHHHHHHHCCCCCHHHEEEEECCCCCC
>Mature Secondary Structure
MEKISSDTGSAYDEIRSRIFDGRLSPGQKISHRGLAHELGVGQMPVRSALQLLASEGLVN
CCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCHHHCCCCCCCHHHHHHHHHHCCHHE
IVDKSGTFVNEPTRDDLREIYELRLALESTAAYLAARGGVTDGLSRSHAQMRRLVDENIA
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
DIMTEQKIGWVFHDEIFKAARNDRLFTTYKLLRAQTHALNELPRSDFATVRRGTLEHLEI
HHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHH
YAAIDARDAETARHRMWNHVIDGTPDRIRLIRAQYDTGQ
HHHCCCCCHHHHHHHHHHHHCCCCCHHHEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]