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The map label for this gene is rfbE [H]

Identifier: 126443273

GI number: 126443273

Start: 2346576

End: 2348030

Strand: Reverse

Name: rfbE [H]

Synonym: BURPS668_A2428

Alternate gene names: 126443273

Gene position: 2348030-2346576 (Counterclockwise)

Preceding gene: 126443999

Following gene: 126442697

Centisome position: 75.08

GC content: 68.32

Gene sequence:

>1455_bases
ATGCTGAAGAACGTCGCGATCAATTTCTTCGGATTGGTCCTGCCGACCTTCGTCTCGCTCGTGACGGTGCCCGCGTACAT
CAAGGCGCTCGGCGTCGAGCGCTACGGCGTCGTGAGCCTCGTGTGGACGCTGATCGGCTATTTCGGGATCCTCGATCTCG
GGATGAGCATGGCCGCGCAGAACCACATCTCGAAGGCGCTCGCGAGCGGCGACGCGAAAGAGAGCGCGCGCGTGTTCTGG
AGCGCGTTCTGGCTGAACCTCGCCACGGGCATCGCGGGCGGGCTGCTGATCTACTTCGGCGCGTTCATGTACACCGCGTA
CTTCACGAAGGTGTCGGCCGAGCTGCAGCACGAGGTGTACCTCGCGCTGCCGTGGCTCGCGCTCGCGATTCCGCTCGCGA
ACGTGTCGTGGGTGTTCGCGGGCGCGATCAACGGCGCCGAGCGTTTCGGCGTGTTCAACACGAACCAGACGATCGGCACG
TTCCTGTTCCAGCTGATGCCGCTCTTCGCCGCGTGGCTCGTCGCGCCGACGCTGCAGGTCGTGCTCGCGGCGGCGGTGGG
CGCGCGCTTCATCGCCGCGGTGATGCTCGGCGCGGCCAGCATGAAGGTGCTCGGCATCCGCAGGATCGCGCCGCCGCAGC
TCGGCACCGCGAAGGGGCTCTTCAGCTTCGGCGGCTGGATGCTGATCGCGAGCACGACGGGCATGATCGCCGACACGCTC
GACCGCGTGATGCTCGGCGCGGGGCTCGGCGCGAAGTACGTCACGTACTACACGGTGCCGCAGAACCTCGTCACGCGGCT
GAACATGCTGCCGAACGCGCTCGTGCGCACGCTGTTTCCGCGGCTGTCGGCGCTCGGGCGCGATCACGCGGACACGCTCG
TCAAGCAATCGCTCGAATTCCTGAACGGCGTGTTCACGCCGATCGCGATCGCCGCGATCTTCGCGCTCGGGCCGTTTCTC
GCGCTGTGGGTCGGCCGGGATCTCGCCGAGCTGTCGGCGCCCGTCGGCCGCGTGCTCGTGATCAGCGTATGGCTCGTCGG
CCAGGCGAGCGTCACGCGCATTCTCATTCAGTCGCAAGTGAATCCGGCGCGCGCGGCGGCCGCGGGCCTCGTGCAGATGC
CGTTCTTCGTCGGCGCGCTGTGGTTCGGCATCCATCATTTCGGGCTGATCGGCGCGGCCGTCGTCGTGGCGGCGCGCGCG
CTCGTCGATTACGGCGTGCTGCTGTATCTGTCCGCGATCCGGATGCGCGCGATCGTGCTCGACATGGTCGCGCACCTCGC
GTTCCTGCTCGCGAGCCTGTACGTCGCGCACGCGCTGCCGGGCCTCGCCGCCGCGATCGCCGCGTGCGCGGCCGCGCTCG
CGCTGAACGTCGGCTGGTCGATCACGATGACGCCCGGCATGCGCGCGCTCGCGCGCAGCGCGCTCATGCGTCTGAACCCG
AGGAAGAGCGTATGA

Upstream 100 bases:

>100_bases
GCGCGGCAAGGTGATGATGTATCGATGGAGGCCGCAATGATCGGGGCGGGAGCGACGGCGATGGCGAACGCGGCGGGGCG
GCGCGTCCATGGATAAAGGC

Downstream 100 bases:

>100_bases
ATCGCGATCTTGCAGAACATCCGTTGCAGCGCGCCGCGACGTTTCAGGACGTCGAGCGCGCCGCGCGCGACGCGCGCAGC
GCCGATGCGCCGCCGCCCGC

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MLKNVAINFFGLVLPTFVSLVTVPAYIKALGVERYGVVSLVWTLIGYFGILDLGMSMAAQNHISKALASGDAKESARVFW
SAFWLNLATGIAGGLLIYFGAFMYTAYFTKVSAELQHEVYLALPWLALAIPLANVSWVFAGAINGAERFGVFNTNQTIGT
FLFQLMPLFAAWLVAPTLQVVLAAAVGARFIAAVMLGAASMKVLGIRRIAPPQLGTAKGLFSFGGWMLIASTTGMIADTL
DRVMLGAGLGAKYVTYYTVPQNLVTRLNMLPNALVRTLFPRLSALGRDHADTLVKQSLEFLNGVFTPIAIAAIFALGPFL
ALWVGRDLAELSAPVGRVLVISVWLVGQASVTRILIQSQVNPARAAAAGLVQMPFFVGALWFGIHHFGLIGAAVVVAARA
LVDYGVLLYLSAIRMRAIVLDMVAHLAFLLASLYVAHALPGLAAAIAACAAALALNVGWSITMTPGMRALARSALMRLNP
RKSV

Sequences:

>Translated_484_residues
MLKNVAINFFGLVLPTFVSLVTVPAYIKALGVERYGVVSLVWTLIGYFGILDLGMSMAAQNHISKALASGDAKESARVFW
SAFWLNLATGIAGGLLIYFGAFMYTAYFTKVSAELQHEVYLALPWLALAIPLANVSWVFAGAINGAERFGVFNTNQTIGT
FLFQLMPLFAAWLVAPTLQVVLAAAVGARFIAAVMLGAASMKVLGIRRIAPPQLGTAKGLFSFGGWMLIASTTGMIADTL
DRVMLGAGLGAKYVTYYTVPQNLVTRLNMLPNALVRTLFPRLSALGRDHADTLVKQSLEFLNGVFTPIAIAAIFALGPFL
ALWVGRDLAELSAPVGRVLVISVWLVGQASVTRILIQSQVNPARAAAAGLVQMPFFVGALWFGIHHFGLIGAAVVVAARA
LVDYGVLLYLSAIRMRAIVLDMVAHLAFLLASLYVAHALPGLAAAIAACAAALALNVGWSITMTPGMRALARSALMRLNP
RKSV
>Mature_484_residues
MLKNVAINFFGLVLPTFVSLVTVPAYIKALGVERYGVVSLVWTLIGYFGILDLGMSMAAQNHISKALASGDAKESARVFW
SAFWLNLATGIAGGLLIYFGAFMYTAYFTKVSAELQHEVYLALPWLALAIPLANVSWVFAGAINGAERFGVFNTNQTIGT
FLFQLMPLFAAWLVAPTLQVVLAAAVGARFIAAVMLGAASMKVLGIRRIAPPQLGTAKGLFSFGGWMLIASTTGMIADTL
DRVMLGAGLGAKYVTYYTVPQNLVTRLNMLPNALVRTLFPRLSALGRDHADTLVKQSLEFLNGVFTPIAIAAIFALGPFL
ALWVGRDLAELSAPVGRVLVISVWLVGQASVTRILIQSQVNPARAAAAGLVQMPFFVGALWFGIHHFGLIGAAVVVAARA
LVDYGVLLYLSAIRMRAIVLDMVAHLAFLLASLYVAHALPGLAAAIAACAAALALNVGWSITMTPGMRALARSALMRLNP
RKSV

Specific function: Could be an O-antigen transporter [H]

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002797 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 51556; Mature: 51556

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCC
>Mature Secondary Structure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CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7507920; 12384590; 12704152 [H]